Siccibacter colletis: KFZ77_15760
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Entry
KFZ77_15760 CDS
T08544
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
scol
Siccibacter colletis
Pathway
scol03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KFZ77_15760 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scol03400
]
KFZ77_15760 (recD)
Enzymes [BR:
scol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KFZ77_15760 (recD)
DNA repair and recombination proteins [BR:
scol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KFZ77_15760 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
UvrD-helicase
SH3_13
AAA_22
SLFN-g3_helicase
AAA_16
UvrD_C
nSTAND3
DEAD
PhoH
AAA_28
MukB
SRP54
CbiA
T2SSE
FtsK_SpoIIIE
TrwB_AAD_bind
ResIII
AAA
NTPase_1
RNA_helicase
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
UYU31279
LinkDB
All DBs
Position
complement(3277970..3279829)
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AA seq
619 aa
AA seq
DB search
MKMRELLIQAVERKCLRPLDAQFAMMIAGEDEPALMLAAAQLSFDAGEGHVCLPLASLTP
HDSFAWRDATLAKALFDEAGVEGDWRAVLQHSPAVAKDDEPAPLKLIDNRLYFNRMWRNE
QCVAAFFRDGNRVIEHDEARIAATLNALFPGDEALNWQKVAAAVALTRRISVISGGPGTG
KTTTVAKLLAALLQMAQDKPPRIQLAAPTGKAAARLTESLGKALRQLPINDAQKALFPAE
ARTLHRLLGAQPRSQRMRHHRDNPLHLDVLVVDEASMIDLPMMARLIEALPPAARVIFLG
DRDQLASVEAGAVLGDVCHFASYGYTSSRAGELQRLTGCELPCGDEARAAPLRDALCLLQ
KSYRFGSDSGIGQLAFAVNRSDLAAVKSILQQPFADIALQSLHTREECVAMVDALAQGYR
EFLQAVTARAAPEVVLEAFSRFQVLCALREGPFGVAGLNEQIEQVLARGRHIRPDPLSRW
YEGRPVMIVRNDSALGLFNGDIGIALDRGQGLRVWFPMPDGTIKSVQPGRLPAHETAWVM
TVHKSQGSEFDHAALVLPTQFTPVVSRELVYTAITRARSKLSLYASERVLEQAIDTRIER
RSGLTAIFGAHQIQAPEGA
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgcgtgagctactgatccaggccgtggagcgtaaatgtctgcggccgctggat
gcgcaatttgccatgatgattgctggcgaagacgaacccgccctgatgctggctgcggcg
caactgagttttgacgccggtgaggggcatgtgtgcctgccgctggcatccctgacgccg
cacgacagctttgcctggcgtgatgctaccctggcgaaagcgctgttcgatgaggcgggc
gtggaaggtgactggcgcgcggtgctgcagcactcacctgcggtcgccaaagacgacgag
cctgcgccgctcaagcttatcgataatcgtctctactttaaccgcatgtggcgcaacgag
cagtgcgtggccgcgtttttccgcgacggcaaccgcgttattgagcacgacgaagcacgc
atagcggctacgctcaatgcgctgtttcccggtgacgaagcccttaactggcagaaagtt
gccgcagcggtagcgctgacgcggcgtatctcggtgatctccggcgggccgggcaccggt
aaaaccaccaccgtggcgaagctgctggccgcactactgcagatggcgcaggataaaccg
ccgcgcattcagctggcagcgcccaccggtaaagccgcggcgcgtctgaccgagtcgctc
ggcaaggcgctgcgccaactcccgatcaacgatgcgcaaaaggcgctgttcccggcggag
gcgcgcacgctgcatcgtctgttaggcgcgcagccgaggagccagcgcatgcggcatcac
cgcgataacccgttgcatctcgacgtgctggtggtggatgaagcctcgatgatcgacctg
ccgatgatggcgcggctgatcgaggcgctgccgcccgcggcgcgagtgatctttttaggc
gatcgcgatcagctggcctcggtcgaagcgggggcggtgctgggcgatgtctgccacttc
gccagctacggctatacctcatcacgcgccggggagctgcagcggctaaccgggtgcgag
ctgccgtgcggtgatgaggcgcgagcagcgccgctgcgtgatgcgctctgcctgctgcaa
aaaagttatcgcttcggcagcgattccggcatcggtcagctggctttcgcggttaaccgt
agcgatctggcggcggtcaaaagcatacttcagcagccgtttgcggatatcgcgctgcag
tcgctgcacacccgtgaagagtgcgtcgcgatggtggatgccctggcgcagggttatcgc
gaatttttgcaggcggttacagcacgagcggcacccgaggtggtacttgaggcgttcagc
cgctttcaggtgttgtgcgcgctacgtgaagggccctttggcgtggccgggctgaatgag
cagattgagcaggtgctggcgcgcggcaggcatattcgtcccgatccgctctcccgctgg
tatgaagggcgtccggtgatgattgtgcgtaacgacagcgcgctggggttgttcaacggc
gatatcggcattgcgctggatcgagggcaggggctgcgcgtctggttcccgatgcctgat
ggcacaattaagtcagtccagccggggcgtttaccggctcacgagacggcatgggtaatg
acggtgcacaagtcgcagggctccgagtttgatcatgctgcgctggtgctgccgacgcag
tttaccccggtggtgtcgcgcgaactggtctataccgccatcacgcgagcgcgcagtaag
ctgtcgctctatgccagcgaacgcgtgctggagcaggcgatagatacgcgtattgaacgg
cgcagtggcctgacggcgatctttggcgcgcaccagattcaggctccagagggagcctga
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