Siccibacter colletis: KFZ77_17815
Help
Entry
KFZ77_17815 CDS
T08544
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
scol
Siccibacter colletis
Brite
KEGG Orthology (KO) [BR:
scol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scol03016
]
KFZ77_17815
Enzymes [BR:
scol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KFZ77_17815
Transfer RNA biogenesis [BR:
scol03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KFZ77_17815
Prokaryotic type
tRNA splicing ligases
KFZ77_17815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
UYU31658
UniProt:
A0ABY6JDV4
LinkDB
All DBs
Position
complement(3727406..3728632)
Genome browser
AA seq
408 aa
AA seq
DB search
MQHNDYQLMARENTAPVKMWTHGVPVEPEAREQLLKTAQMPFIFRHLAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLTAGDLPDNLSGLRSAIEQAVPHGRTGSRT
QRDKGAWARPPQEVDSHWAQLAPRFKRLTDKYPQLLKTNNYQHLGTLGTGNHFIEICLDE
QQRVWVMLHSGSRGVGNAIGTLFISLAQKDMQRHIATLPDRDLAYFAEGSKHYADYIEAV
EWAQDFARHNREVMMSRVLSALSSAIAKPFMTQQEAVNCHHNYVQKEQHFGEEVLVTRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRAMSRTAAKKRYTVEDQIRA
TAHVECRKDSEVIDEIPMAYKDIDAVMTAQASLVEVVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcagcataacgactatcagttgatggcgcgggagaacaccgcgccggtaaaaatgtgg
acgcacggcgtgccggtggagcctgaagcgcgcgagcagctgctgaaaaccgcacagatg
ccgtttattttcagacacctggccgtgatgccggatgtgcatctgggcaaaggctccacc
attggcagcgtgatcccgaccaaaggggcgattatcccggcggcagtgggcgtggatatc
ggctgcgggatgatcgcggtgcgcacctcgctgacggcaggggatctgccggataacctg
agcgggctgcgcagcgccattgagcaggccgtgccgcacgggcgcaccggctcccgcacc
caacgcgataaaggcgcatgggcgcgtccgccgcaggaggtggatagccactgggcgcag
ctggctccgcgctttaagcgcctgacggataaatacccgcagctgctgaaaaccaacaac
tatcagcatctgggtacgctggggaccgggaatcacttcatcgagatctgtctcgacgaa
cagcagcgggtatgggtgatgctgcacagcggctcgcgcggcgtgggcaatgccatcggc
acgctgttcatcagcctcgcgcagaaggacatgcaacgccatatcgcaacgctgcccgac
cgcgacctcgcttattttgcagagggcagcaaacactatgcggattacatcgaggcggtg
gagtgggcgcaggattttgcccgccataaccgggaagtgatgatgtcgcgcgtgctgtcg
gcgctctcctcggccatcgcgaagccgtttatgactcagcaggaagcggttaactgccat
cacaactatgtgcagaaagagcagcactttggtgaagaggtgctggtgacgcgtaaaggc
gcggtgtcggcgcagaaagggcagatgggcatcatccccggttcgatgggggcgaaaagt
ttcatcgtgcgcgggctgggcaatgaagagagcttctgctcctgtagccacggtgccggg
cgcgccatgagccgaaccgctgcgaaaaaacgctataccgttgaggatcagatccgcgcc
accgcgcacgtcgagtgccgtaaggacagcgaagtgatcgacgagatcccgatggcgtat
aaagatatcgatgcggtgatgaccgctcaggcttcgctggtggaagtggtgcatacgctg
cgccaggtagtctgcgtaaaaggataa
DBGET
integrated database retrieval system
