Siccibacter colletis: KFZ77_19090
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Entry
KFZ77_19090 CDS
T08544
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
scol
Siccibacter colletis
Pathway
scol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFZ77_19090 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scol03019
]
KFZ77_19090 (rhlB)
Enzymes [BR:
scol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KFZ77_19090 (rhlB)
Messenger RNA biogenesis [BR:
scol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFZ77_19090 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UYU31884
LinkDB
All DBs
Position
3998405..3999673
Genome browser
AA seq
422 aa
AA seq
DB search
MSKTHLTEQKFADFALHAKVIEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAAEDRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKIGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYTKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPPVTQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILE
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIETYIGHSIPVSKYNPDALMSELPPPKRLSRPPRSGNGPRRSGPPRNRRR
TG
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgactgaacagaagtttgccgacttcgccctgcacgcaaaagtt
atcgaagcccttgaaaagaaaggcttccataactgcacgcccattcaagcactggcgctt
ccgctgaccctggcaggacgtgacgttgcggggcaggcgcaaaccggcaccggcaaaacg
atggcgtttttaacgtcaacgtttcattacttactctctcacccggcggccgaagaccgc
aaggtgaaccaaccgcgcgccctgatcatggcgccaacccgcgagctggccgttcagatc
cacgctgatgccgaaccgctggccgaggcaaccggcctgaaaatcggtctggcttatggc
ggcgacggctacgataagcagttgaaagtgctggaaagcggcgtcgatattcttatcggc
accactggccgtctcattgattataccaagcagaaccacatcaaccttggcgcaatccag
gttgtggtgctggatgaagccgaccgcatgtacgatctcggctttattaaagacattcgc
tggctgttccgtcgtatgccgccggttacccaacgtctgaacatgctgttctccgcgacg
ctctcttaccgcgtgcgtgaactggcgttcgaacagatgaacaacgccgaatacgtggaa
gtcgaaccggagcaaaaaaccgggcaccgtattaaagaagagctgttctacccttctaat
gaagaaaaaatgcgcctgctgcagacgctgattgaagaagagtggccggaccgcgcgatc
gtcttcgcgaacactaagcatcgctgtgaagatatctggggccatctggcagctgacggc
catcgcgtaggtctgctgaccggcgacgtggcgcagaaaaaacgcctgcgtatcctggaa
gagttcacccgcggcgatctcgatattctggtagcaactgacgtagccgcccgcggcctg
catatcccggcagtaacgcacgtgttcaactacgatctgccggacgactgcgaagactac
gtgcaccgcattggccgtactggccgtgccggggcaagcggtcactcaatcagcctcgcc
tgcgaagagtatgcgcttaacctgccagcgattgagacctacattggccactcaattccg
gtgagcaaatacaatccggatgcgctgatgagcgagctaccgccgccgaaacgcctgtcg
cgcccgccgcgctctggtaatggcccgcgccgttcaggaccgccacgtaaccgtcgccgc
acaggttaa
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