Snodgrassella communis: PYG29_00270
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Entry
PYG29_00270 CDS
T09364
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
scom
Snodgrassella communis
Pathway
scom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYG29_00270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scom03019
]
PYG29_00270
Enzymes [BR:
scom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PYG29_00270
Messenger RNA biogenesis [BR:
scom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PYG29_00270
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WMY91859
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All DBs
Position
66903..68300
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AA seq
465 aa
AA seq
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MNAFANLGLSQEIVSALTDQGYQEPTPIQHAAIPKALAGMDLLAAAQTGTGKTAAFMLPS
LERLKRYANSSTSPAMHPVRMLVLTPTRELADQIDQNVQGYLRNLSLRQTVLFGGMNMET
QKQDLRLGCEIVIATVGRLLDHIQQKNIQLNKVEIVVLDEADRMLDMGFIDDIRKIMQML
PPQRQTLLFSATFAPAIQRLAQDFMHHPEKIQVTAQNTTSANVEQHIIALDNGRKRSLLQ
RLINDLNMNQVIVFCNTKQSVDQVNRELNRRGISAQAIHGDKSQQTRLETLAQFKDGSLR
VLVATDVAARGLDIAELPFVINYELPLNAEDYVHRIGRTGRAGAEGVAISLMDEQEQKVF
NAIKELTGNDLLIERIEGFEPRWWEQTPAKHKASQASSVRVECEAARERAVKPTPNNASK
TQNNKEVAIPCQQIPGRARRFSRHNHPQCALLQPNYGARKTKIRI
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcttttgccaatctggggttatctcaggaaattgtctctgcgctgacagatcag
ggctatcaggaacctacaccaattcagcatgcagctattccaaaggctttggcaggtatg
gatttacttgcagctgcgcaaactggtaccggaaaaaccgctgcctttatgctgcccagt
ctggaaaggctgaaacgttatgccaatagcagcacttctccggccatgcatccggtgcgc
atgttggtgctgacgccaacacgtgaactggctgaccagattgaccagaatgtgcaaggc
tatctgagaaatctgtctttacgccagacggtgttgtttggtggcatgaatatggaaact
cagaagcaggatttacgtctgggctgcgagattgtcattgctacggttgggcgtttgctt
gaccatatccaacaaaagaatattcagctgaataaggtggaaattgtggttctggatgaa
gccgatcgtatgctggatatgggttttattgatgatatccgcaaaatcatgcaaatgctg
ccaccacaacgtcaaactctgctgttttcggcaacttttgcgccggcaatccagcgattg
gctcaggattttatgcatcatccggaaaaaattcaggtaaccgcacaaaacacgacttcc
gccaatgtggaacagcatattattgctttggataatgggcgcaaacgttcgttattacaa
cgattgattaatgatctaaacatgaatcaggttattgtgttctgtaatactaagcaaagt
gtcgatcaggttaaccgagaattaaaccgtcgtggtatcagtgcgcaggcaattcatggt
gacaaatcacaacagacgcggctggaaacactggcacagtttaaagacggcagtctgcgc
gtgctggtggccactgatgtggctgcacgtggtctggatattgctgaactgccgtttgta
atcaattatgaattgccgctgaatgcggaagactatgtccaccgtattggccgtactggt
cgggctggtgctgaaggtgtggctatttcgctgatggatgagcaggaacagaaagtattt
aatgccattaaggaattaactgggaatgacttgctgattgagcggattgaaggttttgaa
ccacgctggtgggagcagactccggctaaacataaagcatcacaggcttcttccgtcagg
gttgagtgtgaggctgcgcgtgaacgtgcagtcaaacctactccgaataacgctagtaag
acacagaataataaggaggttgctattccctgccagcagattccgggacgtgcgcgtcgc
tttagccgccacaatcatccgcaatgtgctttgctacagccaaattatggcgcgcgtaaa
accaaaatccgtatttaa
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