Snodgrassella communis: PYG29_01260
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Entry
PYG29_01260 CDS
T09364
Name
(GenBank) 3'-5' exonuclease
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
scom
Snodgrassella communis
Pathway
scom03420
Nucleotide excision repair
scom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PYG29_01260
03430 Mismatch repair
PYG29_01260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scom03400
]
PYG29_01260
Enzymes [BR:
scom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PYG29_01260
DNA repair and recombination proteins [BR:
scom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PYG29_01260
MMR (mismatch excision repair)
Other MMR factors
PYG29_01260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_12
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WMY92035
LinkDB
All DBs
Position
complement(281733..283955)
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AA seq
740 aa
AA seq
DB search
MEILSSAGLLAGLNSEQLAAVTWPAQPALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSI
LAVTFTNKAAREMQLRLSALLPVSVRAIWLGTFHGLCHRFLRLHHQEAGLPKTFQILDIG
DQLAVVKRLLKQLNIADEVIAPRSLQGFINAQKENGLRASRLTARDPHERLMIECYAAYD
SLCQNEGVVDFAELMLRSYEILQSNDVLRCHYQNRFNHVLIDEFQDTNKLQYAWLKLLAG
EHAAVFAVGDDDQSIYRFRGAEVANMTRFLHEFGVSEPIRLEQNYRSVGNILTAANAVIA
HNASRLGKNLHTESGSGEKIRVLQAINDIEEAQFVVDEVKALHREGLDYMQMGILYRSNA
QSRVLEQALFRAGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINVPTRGI
GTRTIENIQAAASQTGISLWQAASSLAAKNSKIAAFVHLIENLQAQTAQVSLPELMAAAI
YDSGLMEYYRTQKGEQQERINNLEELLNAAVAFKPQESGFDSEPEYDENDPLFAVLSFLS
TASLEAGEHQAGQGEDALQLMTVHAAKGLEFDAVFLTGLEEGLFPSEYSMAEKDGLEEER
RLMYVAITRARKRLYLTMAQQRLLHGQTHFALPSRFVDEIPESVLQYLSAHKNTLVARQQ
TTQRTNPFHSSRSKLADTPASTDFDGFQLGQNVHHERFGTGVIIEASHKAEGARLTINFG
KQGIKELDTVFAKSKLTIIS
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggaaattttatcttctgctggcctgctggccggcctaaatagtgaacagttagctgcc
gtaacttggcctgcgcaaccggcgctggtgctggcgggggcaggaagtggtaaaacccgg
gttttaactacccgtattgcctggttgttgcagactggtcaggccagtgtacacagcatt
ctggcggtaacttttaccaataaagcggccagagaaatgcaattgcgcctgagtgcgcta
ttaccggtttcggtacgcgcaatatggctgggtacgtttcatggcctgtgccatcgtttt
ttgcgcctgcaccatcaggaagccggactgccgaaaacatttcaaatacttgatattggc
gaccagctagctgtagtaaagcgtttactcaaacagttgaatattgccgatgaagtaatt
gcaccgcgcagtttgcagggattcatcaatgcacaaaaagaaaatggtttgcgcgcatcc
cgtttgacggcgcgcgacccgcatgaacggctgatgattgaatgctatgctgcttatgat
agtttgtgccagaatgaaggggtagtggattttgctgaactgatgttgcgcagttatgaa
atactgcaaagcaatgatgtgttacgctgccattaccagaatcgttttaatcatgttttg
attgatgaatttcaggatacaaacaaattacagtatgcatggttaaagctgctggccggt
gaacatgcagcggtttttgccgttggtgatgatgaccagagtatttaccgttttcgtggc
gcggaagtagcgaatatgacgcgttttctgcacgaattcggtgtaagtgaacccatccgg
ctggagcagaattaccgttccgtcggcaatattcttaccgcagccaatgctgtgattgcg
cataatgccagccgtctgggtaaaaatctgcacacagaatctggcagtggtgaaaaaatc
cgcgtacttcaggcgatcaatgatatagaagaagcccagtttgtggttgatgaagtcaag
gctttacaccgtgaagggctggattacatgcagatggggatattgtatcgtagcaatgcc
caatcccgtgtgctggaacaggctttgtttcgtgccggcataccctataaaatttatggt
ggtttacgcttttatgagcgtcaggaaatcaagcatgctctggcttatcttcggctggcg
gtcaatcccgatgatgataatgcattattgcgggtaatcaatgtacccacacgcggtatc
ggcacacgcactattgaaaatattcaggcagcagccagtcaaaccggtatttcgctgtgg
caggccgcctccagtctggccgctaagaacagtaaaattgccgcttttgtacacctgatt
gaaaatttacaggcacagaccgcacaagtttcgctgccggagctgatggccgcagccatt
tacgatagcggcctgatggaatattaccgtactcagaaaggtgagcagcaggagcgtatc
aataatctggaggaattactgaatgctgccgtggcattcaaaccgcaggaatctggtttt
gacagtgaaccagaatatgatgaaaacgatccgttattcgctgtactgtcctttttaagc
accgcttcactggaagcaggtgaacatcaggccggacagggggaagatgccttgcagtta
atgacggtacatgcagccaaagggctggaattcgacgcggtttttctcacgggattagaa
gaaggcttgttcccgagcgagtacagcatggcggagaaggatgggctggaagaagaacga
cgtctgatgtatgtggccattacccgggcacgcaaacgcctgtatttaaccatggcacaa
caacgcctgttgcacgggcagactcactttgccctgccgtcacgctttgtagatgaaata
ccggaaagtgtactgcaatatctatcagcacataaaaacacgctggtcgcccggcagcag
actacacagcgtaccaatccgtttcacagtagtcgcagcaaactggcagacacaccagcc
agtactgattttgacggcttccagctggggcagaatgttcaccatgaacgctttggtact
ggcgtaattatagaagctagtcacaaggcggaaggtgctcgtctgaccattaattttggc
aaacagggaattaaagaactggatactgtatttgccaaaagcaagctgactattatttct
taa
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