Snodgrassella communis: PYG29_03060
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Entry
PYG29_03060 CDS
T09364
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
scom
Snodgrassella communis
Pathway
scom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PYG29_03060 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scom03400
]
PYG29_03060 (recB)
Enzymes [BR:
scom01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PYG29_03060 (recB)
DNA repair and recombination proteins [BR:
scom03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PYG29_03060 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WMY92355
LinkDB
All DBs
Position
complement(637772..641404)
Genome browser
AA seq
1210 aa
AA seq
DB search
MNQALNPITMPLHGTSLIEASAGTGKTFNIAALFARLVLLERLPVDAILVVTFTKAATAE
LKTRLRTRLNQALALLQNNLPPEQNDPVLQQLIDTARTQDDDTNLILRLQAAITQFDRAA
VYTIHGFCQRVLTDYAFLCQTPFDTETIDTDPELLCRFAEDFWRRQVSNNSRMATLAVAN
KLTPARLMQEMGRHCGVADLQLRQPPAVDMATINASWQQAWQTVCTHFSSIQDAFWQLYP
QLNGKSYVQKSYQQLFCELQQAMDNSASYQVFSATTLERCAKLAAAQLYEKTKKNQILND
ELVAKVATLAELATAVSAMQAADNSIVLQLQLDCFNYVRQCLQEHRRNSHQRSYDDLLAD
VGMALSADNPMAETLAAALAQTWQIALVDECQDTDPLQYRIFKTAFATQNRPLIMVGDPK
QAIYRFRGADIHAYLRAAADTPAEQRYTLTTNYRSHQALVQAIGHLFSGKQLPFILEGID
YPPVQAQETDNHLHTSRNNIVVPAVVVRWLPEQIEVNDKGEEIIPNKDSLRIRAAECCAY
EIANMINQGRRGELQLSNRSLQAGDIAVLVHSHNEGSMIASALKRCGIISVSLGNQSVFA
STEAQAVMALLRFWLQPQRTETLRFILGGVLFGWTAAQLAELNQNENTLSKWIQLALQTR
EQWHQYGIYTAMQWFASQTGMETRLLSQRNERSLTNLWQLAELLADAEQALPTANALLGW
LASAISNERPANENYLLRLESDEALVKIVTMHASKGLEYPVVFCPFAWDGRQAVRNQEHW
QLLHQKDNVELIANDLLSDSDREELARESMAESLRLYYVAFTRAREQLILYTAACNSTAT
NPMAWLLDGQPDNTLEESQIYWQQTHKKHLPSTLRAAWQTCLANSSPALFHWCEGSVAPS
SVHPQSTPNQPYHALTLTARPFHTIRYTSFTSLSRHDYRHHEHSLEEEKLAPALDQAEVQ
VQVQPLDTSTEAETALLAFERGVNAGLCLHAILEQTEFSQPASPAEQEHIQDCLTRYGFD
CQHSTTMQTLTDAVRQCSLSARTTIASLPVKQRVAEMNFMLHIADFNIADLQQWFACAPG
LPECCIQAAQELDFATVNGFINGAIDLLGEDIHGQVYVIDYKSNHLGNRLADYAPENMDI
AIAKHHYYLQALIYSIACARFLYSRQQLPDYISVRYLFLRGLNPHNQHGIWQWDIKTDSL
MPWLVEHDKT
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagccttaaatccgattaccatgccattacacggcacgagcctgattgaagca
tctgccggtactggcaaaactttcaacatcgccgccctatttgcgcgactggtattgctc
gaacgcctgccagttgatgccattctggtcgtaacctttaccaaggcggctacagcagag
ctaaaaacccgcctgcgtacccgcctaaatcaagcactagccttgttgcaaaataatctg
ccaccggaacagaacgatccagtgctgcaacaactgattgacactgcacgcactcaggat
gacgataccaacctaatcctgcgcctacaggccgcgattacccagtttgaccgtgctgct
gtctacaccattcatggattctgccaacgcgtactcactgattatgcctttttgtgccag
acaccgtttgatactgaaaccatagataccgatccagaactgttgtgccgctttgctgaa
gatttctggcgtcggcaggtaagcaataacagccgcatggctacactggctgtagctaat
aaacttactcccgcccgactcatgcaggaaatggggcgacattgcggcgtggctgattta
caattacgccagcctcctgccgtagacatggcaaccattaatgccagctggcagcaagca
tggcaaacagtctgcacccatttcagcagcattcaggatgcattctggcagttatatccg
cagctcaatggtaaatcttacgtccaaaaaagctatcagcagcttttctgcgagctgcaa
caggcaatggacaactcggccagctatcaggtcttttcagcaaccacattggaaagatgt
gccaaactggccgcagcccagctatacgaaaaaaccaaaaaaaatcaaattctcaatgat
gagctggtagctaaagttgccacactggcggaactggccaccgcggttagtgccatgcag
gcagcggataacagcatcgtattgcaattacagctagactgctttaactatgtgcgccag
tgtctgcaagaacaccggcgtaacagtcaccaacgcagttatgacgatttactcgctgat
gtaggcatggcactgtctgcagataacccgatggctgaaacgctggccgctgcgctggca
caaacttggcagatcgcgctggtggatgaatgtcaggacaccgacccgctgcaataccgg
attttcaaaaccgcttttgccacacagaaccggccactcatcatggtaggcgacccgaaa
caagctatttatcgttttcgcggtgccgatattcacgcctatctgcgtgccgccgccgat
acgccagctgagcaacgttataccctcaccaccaattaccgcagccatcaggcactggta
caggcaattggtcatttattcagtggcaaacagctgccattcattctcgaaggcatcgat
tatccaccagtacaggctcaagaaacagacaaccatctgcataccagccggaacaacata
gtcgtgcctgcggtggtagtgcgctggctgcctgaacagattgaggttaacgacaaaggc
gaagaaattatccccaacaaggatagcctacggatacgtgcggccgaatgttgcgcttat
gaaattgcgaacatgattaatcagggcagacgcggcgagctgcaactgagtaatcggtca
ttacaggccggtgatattgccgtactggtgcactcacacaatgaaggcagcatgattgcc
agtgccctgaaacgttgtggcatcatcagcgtctcccttggcaaccagtcagtttttgcc
agtaccgaagcacaggccgtaatggcactattacgcttctggctgcaaccacagcgcacc
gagaccctgcgctttatcctcggtggcgtactgtttggctggactgcggcacaactggcc
gaactgaatcagaatgaaaacaccctgagtaaatggattcagctggcactgcaaacacgt
gaacaatggcaccagtatggcatttatacagccatgcaatggtttgccagccagaccggc
atggaaaccagactgctcagccagcgcaatgaacgcagcctgaccaacctgtggcaactg
gccgaattactggctgatgcagagcaggccctgcctactgccaacgctctgctgggctgg
ctggccagtgccatcagcaatgaacgtccggccaatgaaaactacctgctgcgactggaa
agtgacgaagcactggtaaaaattgtaaccatgcacgcgtccaaaggactggaatatcca
gtcgtattctgtccattcgcatgggatggcagacaagctgtcagaaatcaggaacactgg
caactgctgcatcaaaaagataatgtcgaactgattgccaatgacctgctgagcgatagc
gaccgcgaagaactggcacgcgaaagcatggccgagagcctgcgtctatattatgtagcc
tttactcgtgcgcgcgaacaactgattctatatacggccgcctgtaacagcaccgccacc
aatccgatggcatggctgttggacggccagcctgacaatacactggaagaatcacagata
tactggcagcaaacccataaaaaacacctgcccagtaccctgcgcgcagcatggcaaacc
tgtctggctaatagcagcccggcactatttcactggtgcgaaggcagcgtggcgccctcc
agcgtccatccccagagcacccccaaccagccctatcatgccttaaccctcactgcacgc
ccatttcataccatacggtataccagctttaccagcctgagcaggcatgattaccgccat
cacgaacacagcctcgaagaagaaaaactggcaccggcactggatcaggccgaagtacaa
gtacaagtacaaccattggataccagcactgaagccgaaacagccctactggcctttgaa
cgcggtgtcaacgccggcctgtgtctgcatgccatactggagcagaccgaattcagccag
ccagccagcccagccgaacaggaacatatacaagattgtctgacgcgttacggctttgac
tgccagcacagcaccaccatgcagacacttaccgatgccgtgcgtcaatgttcactgtcc
gcacgcaccaccatcgccagcctgcccgtaaagcaacgagtagcagaaatgaacttcatg
ttgcatattgccgacttcaatatcgcagatttacaacaatggtttgcctgtgcacccgga
ttgcctgagtgctgcattcaggctgcacaagagctggattttgccaccgttaacggcttt
atcaacggtgccatcgaccttctgggcgaagacattcacggacaagtatatgtgattgat
tacaaatccaaccatctgggtaatcgtctggccgactatgcaccagaaaacatggacata
gccattgccaaacatcactactaccttcaggcactgatttacagcattgcctgcgcacgc
tttttgtacagccggcagcaactgccggactatatcagcgtacgttatctttttctgcgc
ggccttaatccacacaaccagcatggtatctggcaatgggatataaaaaccgacagccta
atgccatggctggtagaacatgacaaaacataa
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