KEGG   Snodgrassella communis: PYG29_03135
Entry
PYG29_03135       CDS       T09364                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
scom  Snodgrassella communis
Pathway
scom03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:scom00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PYG29_03135 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:scom03400]
    PYG29_03135 (uvrB)
DNA repair and recombination proteins [BR:scom03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PYG29_03135 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PYG29_03135 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C UVR ResIII DEAD AAA_30 Kinesin Microtub_bd
Other DBs
NCBI-ProteinID: WMY92370
LinkDB
Position
663207..665234
AA seq 675 aa
MDVIQYPGSVFKLHQPFPPAGDQPTAIQGLLEGLEDGLASQTLLGVTGSGKTFTMANVIA
QSGRPAIIMAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSA
INEHIEQMRLSATKSLMQRQDVIIVATVSAIYGIGDPNEYHQMILHLKEGQKIDQRDIIA
RLVAMQYERGDIDFARGSFRVRGDVIDIFPAESSELALRVSLFDDEVDRMQLFDPISGSL
QQRVGRYTVFPSSHYVTPRDTVLRACEHIKQELGDRIKWFTHEGRLVEAQRIEQRTRFDL
EMLYEMGFCKGIENYSRHFSGKPEGEPPPTLMDYLPKNALMFIDESHVTVSQIGGMYKGD
ASRKQNLVDYGFRLPSARDNRPLKFHEFERVMPQTIFVSATPAKYEEEHAGQVVEQVVRP
TGLIDPEIIIRPVATQVDDLLSEINIRRQQGERVLVTTLTKRMAEQLTDYYAELGVKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSL
IQTIGRAARNVNGKAILYADKITDSMKAAIDETERRRARQIAFNTEHGIVPQQIKKQVRD
LIDGVYHDENGSKGRGRNKLKVGEIHNEDDAVKEIAKLEKAMQAAARDLQFEEAAQIRDK
IRAIKENLLFGASET
NT seq 2028 nt   +upstreamnt  +downstreamnt
atggatgttattcagtatcccggtagtgtgtttaaactgcaccagccatttccaccggct
ggcgaccagcccacggcaattcagggattgctggaagggctagaagatggcctggccagt
cagaccctgctcggggttaccggttcgggcaaaacctttaccatggccaacgtcatcgcc
caaagcggccggccggccatcatcatggcacataacaaaacactggccgcacagctatat
gcagagatgcgtgaattttttccagaaaacgccgtcgagtattttgtttcctactatgat
tactatcagccggaagcctacgtacccagccgtgacctgtttatcgaaaaagactcagcc
ataaacgaacacatcgaacagatgcgcctgagtgccaccaaaagcctgatgcagcggcag
gacgtaatcatagtggctaccgtatcggcaatttacggtattggcgaccccaacgaatac
catcaaatgattctgcacctgaaagaagggcagaaaatcgaccagcgcgacatcatcgcc
agattggtagccatgcagtatgaacgtggcgatatcgactttgctcgcggttccttccgc
gtgcgcggtgacgtgattgacatctttcccgccgaaagctccgagctggccttgcgtgtc
agcctgtttgacgacgaagtcgaccgtatgcaactgtttgacccgatatccggcagcctg
caacagcgcgttggccgctataccgtattcccgtccagccactatgttaccccgcgcgac
accgttttacgcgcctgtgaacacatcaagcaagagctgggcgaccgcatcaaatggttt
acccatgaagggcggctggtagaagcccagcgcatcgaacagcgcacccgctttgattta
gaaatgctttacgaaatgggtttctgcaagggcattgaaaactactcacgtcacttttcc
ggtaaaccagagggcgaaccgccacccaccttaatggactacctgcccaaaaacgccctt
atgttcatcgacgaaagccacgttaccgtcagccagattggcggcatgtacaaaggcgat
gcctcacgcaagcagaatctggtggattacggctttcgcctgccttctgcccgcgataac
cgcccgttaaaattccatgaatttgagcgcgttatgccacaaaccatcttcgtatctgcc
acaccggccaaatatgaagaagaacatgccggacaagtagtcgagcaggttgtgcgcccc
accggcctgattgatccggaaatcatcatccgccccgtggccacacaggtagatgattta
ctgtctgaaatcaatatccgtcgccagcagggcgagcgcgtactcgttaccaccttgacc
aaacgcatggccgaacagctcaccgattactatgccgagcttggcgtaaaagtgcgctac
ctgcacagcgacatcgacaccgtagagcgcgtagaaatcatccgtgacctgcgccttggt
ctgtttgatgtacttgtcggcatcaacctactgcgggaagggctggatattcccgaagtc
tcactggtggccatactcgatgccgacaaagaaggctttctgcgcagccatcgcagcctg
atacaaaccatcggccgcgctgcacgcaacgtaaacggcaaagccatactttatgccgac
aaaattaccgactccatgaaagccgcgattgacgaaaccgagcggcgccgcgcccgccag
atagccttcaataccgaacatggcatcgtaccgcagcaaatcaaaaaacaagtgcgcgac
ctcatcgatggcgtttatcacgacgaaaacggcagcaaaggccgaggtcgcaacaagctc
aaagtaggcgaaatccacaacgaagacgatgccgtaaaagaaatcgccaaacttgaaaaa
gccatgcaggccgccgcgcgcgatttacaatttgaagaagccgcccagattcgcgacaaa
atccgcgccatcaaagaaaacctgctgtttggtgccagcgaaacttaa

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