Snodgrassella communis: PYG29_03840
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Entry
PYG29_03840 CDS
T09364
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
scom
Snodgrassella communis
Pathway
scom02020
Two-component system
scom02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
scom00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PYG29_03840 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PYG29_03840 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scom03021
]
PYG29_03840 (rpoN)
Transcription machinery [BR:
scom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PYG29_03840 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_17
HTH_Crp_2
Peptidase_A4
Motif
Other DBs
NCBI-ProteinID:
WMY92504
LinkDB
All DBs
Position
complement(820691..822070)
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AA seq
459 aa
AA seq
DB search
MQKTSTHLKLNLTTRLSPKLQQSLQVLQLSTLELQELVSGWLADNPFLEEVENTPEDATI
FSQYVQPPQHSMMQGESDIWETLADEPDMYALLRRQVCEYDLDDAMATLVYFLIDNLNEQ
GYLDGSLTDLVENAPLEWRLDEKELARALAILQQFEPTGVGARDLQESLLLQLDNLSLAP
SMNSDAIHTCAHLLISEYFGQWLSTHQFKQLCRKLPQFSATTLETACKLIGTLNPFPCYG
LPDRNGILAIRPDLEVYTDNSGCWQIRILRDAFPQLKIEAGVEEWLQQENTEMDAMCKSK
WQEAQTCIHSLQMRKTTLQRLGEWILQQQQDFFNFGSLALTPLTIKETAQALQLAESTIS
RAINQKYLTCSQGVFPLRYFFSQSVATTDDGTGNSQTAIKSLLQSIINKEDPQHPYSDSY
LVSQLAKQGINLARRTVAKYREALKIPPAHQRKVQYNNH
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagacctctactcatcttaagctcaatcttactacacgtcttagtcccaagctg
caacaatcattacaggtattgcagctatccacactggaattacaggaactggtttctggc
tggctggccgataatccttttcttgaagaagttgaaaatacgcctgaggatgctacaatt
ttttctcagtatgtccagcctccacaacatagcatgatgcaaggcgaaagcgatatctgg
gaaacactggccgatgagcctgatatgtatgcattactgcgccggcaggtgtgtgaatac
gacttagacgatgctatggcaactctggtttattttctgattgataatttaaatgaacaa
ggttatctggacggtagtttaaccgatctggtagaaaatgcacctctggagtggcgactg
gatgaaaaggagctggctcgtgctctggctatcctgcaacagttcgaaccaacgggtgtt
ggtgcacgtgatttacaggaatcgctgctattgcaactggataatctatcacttgcacca
agcatgaatagtgatgcaattcatacctgtgcgcacctgctgattagtgaatactttggt
cagtggctcagcactcaccagttcaagcaactgtgccgtaaactgccacagttttctgcc
actactcttgaaactgcctgcaaactgattggcactctgaatccttttccttgttatggc
ttacctgatcgcaatggtattctggccatccgccctgatctggaagtgtataccgataac
agcggatgctggcaaatccgtattctgcgcgatgcttttccacaattgaaaatagaagct
ggtgtagaagagtggttacagcaagaaaatacggaaatggatgcaatgtgcaaaagcaaa
tggcaggaagcacaaacctgtattcatagtttgcaaatgcgaaaaaccactttacagcgt
ctgggggaatggattttgcagcagcaacaggattttttcaattttggatcactggcctta
actccattaacaatcaaagaaacagctcaggcactgcaattggcagaaagcaccatttca
cgcgcgattaatcaaaaatacctgacttgttcacaaggtgtttttcctctgcgttacttt
ttcagtcagtctgtagccaccacagatgatggcacgggtaacagccagacagctattaaa
tcattactgcaaagtataattaacaaagaagacccacaacatccctactctgattcgtat
ctggtcagccagctggcgaaacagggaatcaatctggcacggcgcacggtagcaaaatat
cgtgaggccttgaaaattccaccggcgcaccaacgtaaagtgcaatacaacaatcattaa
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