Snodgrassella communis: PYG29_04280
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Entry
PYG29_04280 CDS
T09364
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
scom
Snodgrassella communis
Brite
KEGG Orthology (KO) [BR:
scom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scom03019
]
PYG29_04280 (hrpA)
Enzymes [BR:
scom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PYG29_04280 (hrpA)
Messenger RNA biogenesis [BR:
scom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PYG29_04280 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_25
SLFN-g3_helicase
ResIII
NACHT
AAA_23
AAA_30
ABC_tran
AAA_11
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WMY92581
LinkDB
All DBs
Position
complement(918388..922410)
Genome browser
AA seq
1340 aa
AA seq
DB search
MSAYELNQILSKDRFYLQQACKNPARYGGEAKVNSRYQRSHQAYLQRLARLPVPEYDNTL
PVHEKRAAIKQAISQHQVVIICGETGSGKTTQLPKICLELGRGVAGLIGHTQPRRLAARS
VAERIAEELHSQIGQTVGYKVRFNDKTAPESYIKLMTDGILLAESQTDRFLNTYDTIIID
EAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDAERFSQHFTLHGIPAPVIEVSGRT
YPVEIRYRPLHSTDADEAEIEINDAIVDAADELAREGNGDILIFLPGEREIREAAHALQQ
SPLRRNDQILPLFARLSAAEQHKIFHPDSGQRRIVLATNVAETSLTVPGIRYVIDTGLAR
VKRYSARAKVEQLHIEPISQAAARQRAGRCGRVAAGICIRLYSETDFNQRPAFTDPEIIR
SNLAAVILRMISLKLGDVNAFPFLQAPEQRYINDGYQILLELGAVDEHNQLSKLGEQMAR
LPLDPRISRMLLAGKRLQCVAEMLVIVAALSIQDPRERPLEAREAATKAHERFNDKQSDF
LAYLNIWDSYQRERDKGLSNRQMIQWCHQYFLSHLRMREWRELHHQLAQIAIDMGLTDKA
SAYRQTPASLTNQPDIDNNSDQDLSAKLKQQQIARRQQRHNRQQAKEASYEQIHRALLTG
LITNIGLKSPEGHDYTGARGIHFHLFPASSLFKSKPKWVIAAELTETTRLYARDVGKIEP
EWIESEVPHLLRHHYFEPHWEQKRGEVVASERITLYGLTVLPRRPVSYGSINPKEAREIF
IRSALVAQECNLKAAFFQHNQKLIEEITELEHKSRRQDVLVDEEALFSFYDQRLPARVAS
NDHHLPLADIRTFETWRKQAEAENPQLLYLSRDDLMQHAASNVTENQFPEYLSTKDGRCT
LSYRFEPHHPLDGVTVAVPLPLLNRISPARLEWLVPGMIREKLQLLIKALPKQIRRICVP
VPDFITTFLSSNPDINAPLLPQLAHAIARQAGDMRLLSQIDIEQWRTQQLPAHCYFNIQV
IDDSGTELASGRDLSILQQQLGQAAAVTFRDNSNEFERDNITNWDIGKLPESIKFARAEQ
QLTGYLGLQLQKNGSIALRLFDTAIAAEQAHRSGVLALMSLHLKEQIKDLNKGLPDFTQI
AMLLKHLGTDTLREDLTHTVLDRALIGEDDLPRDEKSFKEQLKRARSRLPAVKEAVNHYA
LQTAQAYAEVNSHLGKHPLTQLLRQHLNSLIYPGFASATPWQQWPRLPIYLQAMLKRMDK
YSSNIPRDTAREADIQALTNTWQEKISQYKQQNQPVPTAIAEFRWMLEELRVSLFAQELK
TPYPVSAKRLSKEWDKRTAL
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcatacgaacttaatcaaatcctaagcaaagaccgcttttacctgcaacaagcc
tgcaaaaatcctgcccgttacggcggtgaagcaaaagtaaacagccgttaccagcgctcc
catcaggcctatctgcaacgactggccagattacccgtgcctgaatacgacaataccctg
cccgtccatgaaaaacgcgcagcaatcaaacaggccatcagccagcatcaagtagttatc
atctgcggcgaaaccggatcaggtaaaaccactcagctgccgaaaatctgcctcgaactg
gggcgcggcgtagccgggctaattggccacacccagccgcgacggctggctgcccgctct
gtagccgagcgtattgccgaagaactgcatagccagattggccaaactgtaggctacaaa
gtacgctttaacgacaaaaccgcacccgaaagctatatcaaactgatgaccgacggcatc
ctgctggccgaaagtcagactgatcgctttctcaacacctacgacaccatcatcatcgac
gaagcgcatgaacgtagcctgaacatcgactttttactgggctatctcaagcagctttta
ccacggcgtcccgacctgaaagtcatcatcacctcggccaccatcgatgccgaacgcttt
agccagcatttcaccctgcatggcattcccgctcctgtcatcgaagtatctggtcgaacc
tatccggtagaaatacgctatcgtcccctgcacagcaccgatgcagacgaagccgaaata
gaaatcaacgacgccattgttgatgctgccgacgagctggcacgtgaaggcaatggtgat
atcctgatattcctgcccggcgaacgtgaaatccgcgaagctgcgcatgcattacagcaa
tcgccgctacgccgtaacgaccaaatcctgcccctgtttgcacgcctgtctgcggctgaa
cagcataaaatctttcatccagatagtggccagcgccgtatcgtactggctaccaacgtt
gccgaaacctcccttaccgtacccggcatccgctatgttatcgataccgggctggctcgg
gtaaaacgttattccgcccgcgccaaagtagaacaattacatatcgaacccatcagtcag
gctgctgcacgtcagcgtgccggccgttgtggccgcgttgctgctggtatctgtatccgc
ctgtatagcgaaacagacttcaaccagcgcccagcctttaccgacccagaaattatccgc
agcaatctagccgctgttatcctgcgcatgattagccttaaactgggcgatgtaaacgcc
ttcccctttttacaggcacccgagcaacgctatatcaacgacggctatcaaatcctgctc
gaacttggtgcagtagacgaacacaaccagctaagcaaactgggcgaacaaatggcgcgc
ctgccgctagacccacgcatcagccgcatgctgctggctggcaaacgtctgcaatgcgtt
gctgaaatgctggtaatcgtagcagcactatcgattcaggatccgcgtgaacggccactg
gaagcacgtgaagcagcgaccaaagcgcacgaacgctttaacgacaaacaatctgacttt
cttgcctatctcaatatctgggattcttaccagcgtgaacgcgataaaggtttatccaac
cgacagatgatacagtggtgtcatcaatatttcctctcccacctgcgcatgcgtgagtgg
cgtgaactgcatcaccagctggcacagattgccatagacatgggacttaccgataaagcc
agtgcctaccggcaaacacctgccagccttaccaatcagccagacatcgacaataacagc
gatcaggatttatccgccaaactcaaacagcagcagattgcccgtcggcaacaacgccac
aaccggcaacaggccaaagaggccagctacgaacagattcaccgcgccctgctcaccggc
ctgataaccaatattggtctgaaaagtcccgaaggacacgactacaccggcgcgcgcggc
attcattttcatctgtttcccgcctcctcattatttaaaagcaaacccaaatgggttatt
gctgccgaactcaccgaaactacccgtttatatgcccgtgatgttggcaaaatcgaacca
gaatggattgaaagcgaagtccctcatcttttgcgccatcactacttcgaaccacattgg
gaacagaaacgcggcgaagtagtggccagcgaacgcatcaccctgtacggccttaccgtc
ctgccccgtcgtccagtaagctatgggagcatcaacccaaaagaagctcgtgaaatcttt
atccgcagcgcactcgtagcacaagaatgcaacctcaaagcagcttttttccagcataac
cagaaattgatagaagaaatcaccgaactggaacacaaatctcgccggcaggatgtactg
gtagatgaagaagcactgttcagcttctacgaccagcgcctgccagcccgtgtagcaagc
aacgaccaccatctgccactggccgatatccgcacctttgaaacatggcgcaaacaggct
gaagccgaaaatccccaactgctgtacctgagccgtgacgacctgatgcaacatgcggcc
agcaatgtcaccgaaaaccagtttcccgaatacctcagtaccaaagacggccgctgtacc
ctcagctaccgtttcgaaccccatcacccgttggatggcgttaccgtagcagtcccactg
cccttactcaaccgcatcagccccgcgcggcttgagtggctcgtacccggcatgattcgc
gaaaaactgcaattactcatcaaagccctgcccaaacaaatccggcgcatctgcgtaccc
gtacccgatttcatcaccacttttctaagcagcaatcccgatatcaatgccccgctgctg
ccgcaactggcacacgccattgcccgacaggccggcgacatgcgactgctcagccagata
gacatcgaacagtggcgcacacaacaattaccagcacattgttatttcaacattcaagta
atagatgacagcggcacagaactggccagcgggcgcgacctcagtatcctgcaacaacag
ctcggacaggcggctgcggtaaccttccgcgacaacagcaacgaatttgagcgcgacaac
atcaccaactgggatatcggcaaactgccagaaagcatcaaatttgctcgcgccgagcag
caacttaccggctatcttggcctgcaactgcaaaaaaacggcagcatcgccttacgcctg
tttgataccgctattgccgccgaacaggcacatcgcagtggcgtactcgccctgatgagc
ctgcacctgaaagaacagattaaagacctcaacaaaggcctgccagactttacccaaatt
gccatgctgctcaagcatcttggcaccgacaccctgcgcgaagacctcacacatacagtt
cttgaccgcgccctgataggcgaagacgacctgccacgtgacgaaaaatccttcaaggag
cagctcaaacgggcgcgcagccgtctgccagcagtaaaagaagctgttaaccactatgcc
ttgcaaaccgcacaggcctatgccgaagttaacagccatctgggtaaacatccattaacc
cagcttttgcgccagcacctcaacagcctgatttaccccggctttgccagtgccaccccg
tggcagcagtggccgcgcctgcccatatacctgcaagctatgctcaaacgcatggacaaa
tatagcagcaacatcccccgtgatactgcccgcgaagcagatattcaggcactcaccaat
acatggcaggaaaaaatatcccaatataaacaacaaaaccagccggtacccacagccata
gccgaatttcgctggatgcttgaagaactgcgcgtttccctatttgcacaagaactgaaa
accccttatcccgtttccgccaaacgcctgagcaaagagtgggacaaacgcacagcattg
taa
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