Snodgrassella communis: PYG29_05875
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Entry
PYG29_05875 CDS
T09364
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scom
Snodgrassella communis
Pathway
scom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PYG29_05875 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scom03400
]
PYG29_05875 (mfd)
Enzymes [BR:
scom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PYG29_05875 (mfd)
DNA repair and recombination proteins [BR:
scom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PYG29_05875 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
AAA_30
UB2H
ERCC3_RAD25_C
SecA_DEAD
HemY_N
Motif
Other DBs
NCBI-ProteinID:
WMY90988
LinkDB
All DBs
Position
complement(1283982..1287392)
Genome browser
AA seq
1136 aa
AA seq
DB search
MPSVAPFVLPQANQTAFWPDLNAGSLPLLLSKHLPEKKLKIILTADAEQAIRIQSAWQFF
DPSARIVFFPDWETLPYEHFSPHQELVSERLSTLWQLKNGLVDVLLLPLATAMQKIAPPS
FLLGRTFWLKTGQQLDIEALKHSLIEAGYNHVTHVVATGEFATRGGILDIFPMGSEIPFR
LDLFDNEIDTIKTFDADSQRTLSSVDEIRLLPAHEFPTDSDAQKIFRSRFREEISSDARK
ATVYAAVSEGHFGAGVEYYLPLFFEEECVSIFDYIHEDATLVCLGDIYNEAARIWQDVKQ
RYALAQGDPAYPPLAPSYLYLSEDQFGAHIKTYARLIPQLSAENIYTLPGVAVDRQADDP
LHALKNFLKQYTGRVLICAESLGRRETMLNFMREHNLQPNVVNGWQDFLNGSTKLCLTVA
PLSYGCLLPEQQLAIITEADLYQYVVRGRRTRRKHSAISDGMLRDLAEIKIGDPVVHEQH
GIGRYLGLVTLDLGEGASEMMLLEYAEGSQLYVPVNQLQLISRYAGSAHENVSLHKLGHG
AWDKARHKAAEKARDTAAELLNLYAQREAQQGHRFSLNEMDYQAFAQGFGYEETEDQAAA
IAATIKDLCAEKPMDRLICGDVGFGKTEVALRAAFVAAMAGKQVVVLAPTTLLVEQHAQN
FADRFADFPIKVAQLSRFNTSKQTQATLSGLADGTVDIVIGTHKLVQPDVHFKNLGLVII
DEEHRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKT
FVRQFSDGLIREAVMRELKRGGQVFFLHNEVDTIANTHEKLSTLLPEARIGIAHGQLRER
ELEQVMRDFLQQRYNILLCSTIIETGIDIPNANTIIIERADKFGLAQLHQLRGRVGRSHH
QAYAYLLVPEAMTKDAQKRLEAIEIADDLGAGFTLAMQDLEIRGAGEILGEGQSGEMIQV
GFTLYTEMLKQAVRNLKKGREPDLDAPLGITSDIKLHSPALLPESYCPDIHARLVLYKRL
ASCETIAEIDQIHEELIDRFGLPEPAVSTLIASHHLRIEAASLGIDTIDASNEAITFTFG
KHHRINPATIVAIMQSDKNYRLVGADKLRVNIAIEDVMQRVQIIKNIMKQLAVDAG
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgccctccgttgccccttttgtactgcctcaagccaatcaaactgcgttctggccagat
ttaaacgctggtagtttgccattgctgttaagcaaacatttacctgaaaaaaaactgaaa
attattcttactgccgatgccgaacaggcaattcgcattcagtcagcttggcaatttttc
gacccgtcagcacggatagtattctttcccgactgggaaacgctaccatacgagcacttt
tctccccatcaggaactggtatccgaacgcctcagtaccttatggcaattaaaaaacgga
ttagttgatgttttacttcttccgctggccacagcaatgcaaaaaattgcaccaccttct
tttttgcttggtcgcactttctggctgaaaaccggtcagcaattggatatagaggcactt
aagcatagcctgattgaagctggctataatcatgtcacccatgttgtcgcaacaggcgaa
tttgccacccgtggcggtattttggatattttcccgatgggcagcgaaataccttttcgt
ctggatttatttgataacgaaattgacaccattaaaactttcgatgccgacagtcagcgc
acattaagcagtgtagatgaaatccgcctgcttcctgcgcacgagtttcctaccgatagc
gatgcacagaaaattttccgtagtcgctttcgtgaagaaatcagtagtgatgcccgcaag
gcaacagtatatgctgctgtatctgaaggccacttcggagcaggtgttgaatattacctg
ccattgttctttgaagaagaatgtgtcagcattttcgactatatacatgaagatgccact
ctggtctgtctaggggatatttataatgaagctgcccgcatctggcaggatgtcaaacag
cgttatgctctggcacagggcgatccggcctatccgcctttagcacccagttatctgtat
ttaagcgaagaccagtttggtgcacacattaaaacatatgcacgtctgattccgcaatta
agcgcagaaaatatttataccctgcccggtgtcgcagtagaccgtcaagcagacgacccc
ttacatgcacttaaaaattttttaaaacaatacactggtcgggtactgatttgtgccgaa
agcctcgggcggcgtgaaaccatgctgaacttcatgcgcgagcacaacttgcaacctaat
gtagtaaacggctggcaggattttcttaatggcagcaccaaattgtgccttactgtcgca
ccattaagttatggttgtctgctgccagaacaacaattagccatcatcactgaagccgat
ttataccaatatgttgtacgcggccgccgtacacggcgcaaacacagtgccatttccgac
ggcatgctgcgtgatttagccgaaatcaaaattggcgaccctgttgttcacgaacagcat
ggtattggccgttatctgggtctggttacactggatttaggcgaaggcgccagtgaaatg
atgctgctggagtacgcagaaggttcacaattatacgtacccgttaaccagctacaattg
atttcacgttatgcaggcagtgcccatgaaaatgtcagcctgcacaaacttggtcatggc
gcgtgggataaagcgcgccataaagcggctgaaaaagcccgtgataccgcggcagaacta
ttaaatctgtatgctcagcgggaagctcagcagggacaccgctttagtttaaatgaaatg
gattatcaggcctttgctcaaggctttggctacgaagaaaccgaagatcaggcggctgcg
attgctgcaacaattaaagatttatgtgctgaaaagcccatggatcggctgatttgtggc
gatgtagggtttggaaaaaccgaagtggccttacgtgcagcctttgttgccgccatggcc
ggtaaacaagtagtagttctggctccgacaacactgcttgtggagcaacatgcacaaaat
tttgccgatcgctttgctgattttcccattaaagtagctcaactctctcgttttaatact
agtaaacagacacaggctacactatccggtctggctgacggtacagtagacatcgtgatt
ggtacgcacaaactggtacagccagatgttcatttcaaaaatctgggactggttatcata
gatgaagaacaccgtttcggagtacggcagaaagaacagttgaaacgattacgcgcaaat
gtcgacgtgcttaccctgacagccacaccgattccgcgcaccttaagcatggcactggaa
ggtttgcgtgacttttcactgattactaccgcccccagccgtcgtctggcagtgaaaact
tttgtgcgccagtttagcgatggtttaatacgcgaggctgtaatgcgggagctgaaacgt
ggcggtcaggtattttttctgcataatgaagttgataccatagcaaacacacatgaaaaa
ctcagtaccttattgcccgaagcacgcatcggtattgcccacggccagctgcgagaacgc
gagcttgaacaggtaatgcgtgattttctccagcagcgttataacatcttactgtgttca
accattatcgaaacaggaattgatatacctaatgccaataccattatcattgaaagagca
gataaatttggtcttgctcagctacaccaactgcgtggtcgcgtaggccgctctcatcat
caggcctatgcttatttattggtaccggaagcgatgaccaaagacgcgcagaaacgtctg
gaagccatagaaatagcagatgatttgggtgcaggttttactctggcgatgcaggatctg
gaaatccgtggcgcaggcgaaattctgggcgaaggacagtctggtgaaatgattcaggtc
ggtttcactctatatacagaaatgctcaaacaggctgtacgtaacctgaaaaaaggccgc
gaacctgatctagatgcaccattaggcatcaccagtgacatcaaactgcatagcccagct
ttactgccagaaagttattgccccgatatccatgcccgtcttgtgctttataaacgtctg
gccagctgtgaaacgatagccgaaatagaccagatacacgaagaactgattgatcgcttc
ggcctaccagagcctgctgtttccaccctgatagccagccatcatctgcgcattgaggca
gctagtctgggcattgatacgatagacgccagcaatgaggccattacatttacttttggt
aagcatcatcgcatcaatccagcaaccattgtggcaattatgcaaagtgacaaaaactac
cgtcttgttggtgccgacaaactcagagttaatattgccattgaagatgtcatgcaacgc
gtacagataatcaaaaacatcatgaagcagcttgctgttgatgcaggctaa
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