Snodgrassella communis: PYG29_08315
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Entry
PYG29_08315 CDS
T09364
Name
(GenBank) AMP-binding protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
scom
Snodgrassella communis
Pathway
scom00061
Fatty acid biosynthesis
scom00071
Fatty acid degradation
scom01100
Metabolic pathways
scom01212
Fatty acid metabolism
scom02024
Quorum sensing
scom04146
Peroxisome
Module
scom_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
scom00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
PYG29_08315
00071 Fatty acid degradation
PYG29_08315
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
PYG29_08315
09145 Cellular community - prokaryotes
02024 Quorum sensing
PYG29_08315
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
scom01004
]
PYG29_08315
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scom04147
]
PYG29_08315
Enzymes [BR:
scom01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
PYG29_08315
Lipid biosynthesis proteins [BR:
scom01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
PYG29_08315
Exosome [BR:
scom04147
]
Exosomal proteins
Exosomal proteins of breast milk
PYG29_08315
Exosomal proteins of breast cancer cells
PYG29_08315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
DUF1576
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
WMY91429
LinkDB
All DBs
Position
complement(1843609..1845273)
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AA seq
554 aa
AA seq
DB search
MEKIWLNSYQEGVRAEVDVRAYSSIIDVLHSSVKKFGPQPSFSNMGTTLTYTQTATYVNQ
FTSYLQNILKLQKGERVAIMMPNVLQYPITVFGVLQAGGVVVNVNPLYTPRELAHQLIDS
GATAIIVLENFAHTVAEVLAQTAVKQVIVASMGEMLGWLKGSVVNFMLRKVKKMVKPFHL
PQSITFSQALTLGKKQRFTPVPLALEDLALLQYTGGTTGVSKGAMLTHGNIVANMQQASE
WIKANLTPGEEVVVTPLPLYHIFSLTVNIMIFAKTGSKNILITNPRDINALVKVLKKNRV
TVMSGVNTLFNALIHNEEFKTIDFASWKLVLGGGMATQKVVAQEWKAITDVPIIDAYGLT
EASPGVCANPLNNPEYTGTAGLPVSNTDIEIRDDNGKVLGIGEVGELWVQGPQVMKGYWN
RPEETAKVLDSRGFVATGDMAEIDAKGYVRLVDRKKDMILVSGFNVYPNEVEEIVAAMPE
VLEVACIGIPNEKSGEAIKLFVVKRDPNLTREQIIAYCRQNLTGYKVPKDIEFCPELPKS
AVGKILRKDLRTNE
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaatctggttaaatagttatcaggaaggggtgcgggcagaggtggatgtgcgt
gcttattcgtcaattattgacgtgctgcactccagtgtaaagaagtttggcccgcagcca
agtttttccaatatgggtacaacgcttacttatacgcaaactgctacttatgtgaatcag
tttacttcttatttgcagaatatactcaagctgcaaaaaggtgaacgggtagcaattatg
atgccgaatgtgttgcaatatccgattactgtatttggtgtattgcaggcaggtggcgtt
gtggtgaatgtcaacccgctgtatacaccgcgtgagttggcacatcaactgattgattca
ggtgctactgccattatcgtgctggaaaattttgcccatacagtggctgaagtattggcg
caaacagcagtcaaacaggtaattgtggccagtatgggcgagatgcttggctggctaaaa
ggcagtgtggtgaatttcatgctgcgcaaagttaaaaaaatggtgaagccttttcatctt
cctcagtcgattactttttctcaggcactgacactggggaaaaaacagcgttttacccca
gtaccactggcattagaggatttggcattattgcagtataccggcggcacaacaggtgtt
tccaagggagcaatgctgacacatggcaatattgtggccaatatgcagcaggcatcggaa
tggattaaggccaatctgacaccgggcgaggaagtggtggtaacgccattgccgctatat
catattttttcactcactgtgaatatcatgatttttgccaaaaccgggtctaagaatatt
ctgattaccaatccgcgtgatatcaatgctttggttaaagtattgaaaaagaatcgggta
acagtaatgagtggtgtcaatacattatttaatgccttgattcataatgaggaatttaaa
acgattgactttgcatcatggaaattggttctgggcggcgggatggctactcagaaagta
gtggcgcaggagtggaaagccattactgacgtaccaattatcgatgcttatggtctgact
gaagccagcccgggcgtgtgtgctaatcccttaaataatcctgaatatacaggtacggca
ggtttgccagtatcgaatacggatattgaaatccgtgatgataacggtaaggtgctgggt
attggtgaagtgggtgagttatgggtgcaggggccgcaggtgatgaaaggctactggaac
cggccggaggaaaccgctaaagtactggatagccgtggctttgtggctacgggtgatatg
gctgaaattgatgccaaaggctatgtgcgtctggttgaccgcaagaaagacatgatatta
gtatcaggtttcaatgtctatccgaatgaagtggaagaaatagtagccgctatgcccgag
gtattggaagtagcctgtattggtatacctaatgagaaaagtggtgaggcgattaaatta
tttgtggttaaacgcgaccctaatctgacgcgcgaacagattattgcttattgtcgccag
aatctgactggttataaagtgccaaaagatattgagttctgccctgaattgcctaaatct
gcggtgggcaagattctgcgcaaggatttacgcaccaatgaataa
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