Stenella coeruleoalba (striped dolphin): 307178690
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Entry
307178690 CDS
T11893
Symbol
LIG1, ACYUVP_003963
Name
(RefSeq) DNA ligase 1 isoform 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
scoo Stenella coeruleoalba (striped dolphin)
Pathway
scoo03030
DNA replication
scoo03410
Base excision repair
scoo03420
Nucleotide excision repair
scoo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
307178690 (LIG1)
03410 Base excision repair
307178690 (LIG1)
03420 Nucleotide excision repair
307178690 (LIG1)
03430 Mismatch repair
307178690 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scoo03032
]
307178690 (LIG1)
03400 DNA repair and recombination proteins [BR:
scoo03400
]
307178690 (LIG1)
Enzymes [BR:
scoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
307178690 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
307178690 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
307178690 (LIG1)
DNA replication proteins [BR:
scoo03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
307178690 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
307178690 (LIG1)
DNA repair and recombination proteins [BR:
scoo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
307178690 (LIG1)
NER (nucleotide excision repair)
Other NER factors
307178690 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
307178690 (LIG1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
307178690
NCBI-ProteinID:
XP_079763258
LinkDB
All DBs
Position
20:complement(50915028..50956905)
Genome browser
AA seq
922 aa
AA seq
DB search
MQRSIMSFFQPKKEGKVKKPEKEISNSTRETESPPKVALKERNRVVPEGDSPVKRPGRKM
ARVLGSEGEDEEEEAPKPPKIQKHAPDSPQVSPPSPGTPPESSPSHSSTSPTVVSPSGIP
KRRTARKQLSKRTFQDVLQEQGKDEDGGTKKKRKKEEEEEEELETPTESLTEPEGGNKKE
AEEGDQPRSPPEPLKTSTKPPTESVSEPKVAVKQGPQEDGQAKPPPKAPKTLSSFFSPRK
PAIKQEAKEEGPSALGKDETKGHLDPSSYNPAKNNYHPVEDACWKVGQRVPYLAVARTFE
KIEEVSARLRMVETLSNLLRSVAALSPADLLPILYLSLNRLGPPQQGLELGIGDGILLKA
VAQATGRQLESVRAEAAEKGDVGLVAESSRSTQRLMLPPPALTASGVFTKFRDIAQLAGS
ASTAKKMDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFP
PAVVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGVERLPEHCRLSPG
VPLKPMLAHPTRGVSEVLRRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGR
YPDIISRIHKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCL
YAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKD
SCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGG
FLLAAYDEESEELQAICKLGTGFSDEELEEHHQTLQALVLPAPRSYVRADGAVAPDHWLD
PSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFICVREDKKPEEATTSAQVACLY
RKQSQIQNQQGAEPDSDLEDFY
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtattatgtcatttttccagcccaagaaagagggcaaagtgaagaagcca
gagaaggagatatccaacagcaccagagaaacagagtcccctccaaaggtggcgctgaag
gagcggaatagagtggtacctgagggcgactctccagtgaagaggccagggaggaagatg
gcccgggtcctgggcagcgaaggggaggacgaggaggaggaagcccccaagccccccaaa
atccagaagcatgctccagattccccacaagtctcccctcccagtcctggcacaccgcct
gagagcagcccttcccactctagcacctctcccacggtcgtctccccgtcagggatcccg
aagcgtcgcacggcccggaagcagctttccaaacggacatttcaggatgtcctgcaagag
cagggcaaggacgaggacggaggaaccaagaagaagaggaagaaggaggaggaggaggaa
gaagaattagagacaccgacagaaagcctcacagagcctgaagggggcaacaagaaggaa
gcagaagaaggggaccagcccaggtcaccccctgagcccctgaagacctccacaaagccc
ccaacagaaagcgtttcagagcccaaggtggccgtgaagcagggaccacaggaggacggc
caggctaagcctccccccaaagctcccaagacgctcagcagtttcttctctccccggaag
ccagcgatcaaacaagaagcaaaagaagagggacccagcgctctaggaaaggacgagacc
aagggacacctggacccatccagctacaatcctgccaagaacaactaccatcccgtcgaa
gatgcttgctggaaggtgggccagagagtcccttacctggctgtggcccggacgtttgag
aagatcgaagaggtttctgcacggctccggatggtggagacactgagcaacctcctgcgc
tccgtggcggccctgtcacctgctgacctcctccccatcctctacctcagcctcaaccgc
ctggggccgccccagcagggcctggagctcggcattggtgacggcatcctcctcaaggcg
gtggcccaggccacaggccggcagctcgagtcggtccgggccgaggcggccgagaagggc
gacgtggggctggtggccgagagcagccgcagcacccagaggctcatgctgcccccaccc
gccctcaccgcctccggcgtcttcaccaagttccgggacatcgcgcagctggccggcagc
gcttccacagccaagaagatggacgtcatcaaaggcctctttgtggcctgccgccactca
gaagcacgattcatcgccagagccctgagtggacggctgcgcctcgggctggcagagcag
tcagtgctggcggccctcgcccaggccgtgagcctcaccccgccaggtcaagaattcccc
ccagccgtggtggatgctgggaagggcaagacagcagaggccagaaagacatggctggag
gagcaaggcatgatcctgaagcagacgttctgcgaggtgcccgacctggaccggatcgtc
cccgtgttgctggagcacggtgtggagcggctcccggagcactgcaggctgagcccaggg
gtccccctgaaaccaatgttggcccacccaacgcggggcgtcagcgaggtcctgaggcgc
tttgaggaggcagctttcacctgcgagtacaaatacgatgggcagagggcacagatccac
gttttggaaggcggcgaggtgaagatcttcagcaggaatcaggaggacaacaccggaagg
taccctgatatcatcagccgcatccacaagattaaactcccatcagtcacatccttcatc
ctggacgcggaagctgtggcttgggaccgggaaaagaagcagatccagccattccaagtg
ctcaccacccgcaaacgcaaggaggtggacgcggcagagatccaggtgcaggtgtgtctg
tacgccttcgacctcatctacctcaatggagagtccctggtacgtgagcccctttcccga
cgccggcagctgctccgggagaacttcgtggagacggagggcgagtttgtctttgccacc
tctctggacaccaaggacacggaccagatcgccgagttcttggagcagtcggtgaaagac
tcctgcgaggggctgatggtgaagaccctggatgtggacgccacctacgagatcgccaag
aggtcgcacaactggctcaagctgaagaaggactacctggatggcgtgggcgacaccctg
gacctcgtggtgatcggcgcctacctgggccggggaaagcgggccggccggtacgggggc
ttcctgctggccgcctacgacgaggagagcgaggaactgcaggccatatgcaagctcgga
acgggcttcagcgacgaggagctagaggagcatcaccagaccctccaggccctggtgctg
cccgccccacgctcctatgtccgggccgacggcgctgtggcccctgaccactggctggac
cccagcgccgtgtgggaggtgaagtgcgcagacctctccctctcccccatctacccggct
gcccggggcctggtggatagcgagaagggaatctccctccgcttccctcggtttatctgc
gtccgtgaggacaagaagccggaggaggccaccaccagtgcccaggtggcctgtctgtac
cggaagcaaagtcagattcagaaccagcaaggcgcagagccagactccgacctggaagat
ttctactag
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