Stenella coeruleoalba (striped dolphin): 307193020
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Entry
307193020 CDS
T11893
Symbol
SKIC2, ACYUVP_018293
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
scoo Stenella coeruleoalba (striped dolphin)
Pathway
scoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
307193020 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scoo03019
]
307193020 (SKIC2)
Enzymes [BR:
scoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
307193020 (SKIC2)
Messenger RNA biogenesis [BR:
scoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
307193020 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
307193020 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Ski2_N
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
307193020
NCBI-ProteinID:
XP_079790547
LinkDB
All DBs
Position
10:23705277..23715285
Genome browser
AA seq
1246 aa
AA seq
DB search
MMETERIVLPPPDPLDLPLRAVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLATLGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPVSQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPEDHPAPAPGLLSLSRLLEPLDLGGGDEDESEAVGQPGGPRRD
TVSASPCSAPLARASSLENLVLQEASTAVAPPEPPKPPPQEQWAIPVDVTSPVDDFYRLI
PQPAFRWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHHLFTGNSPKTQGELFLLLDSRGTFHTKGYYAAVEARKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSTRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQTLAELTKRLGALEEPDVTGQLVDLPAYYSYGEELTETRSLIQRRIIESVNGLKSLS
AGRVVIVKNQKHHNALGVILQVSSSSTSRVFTTLVLCDKPMSEDPQERGPASPSVPYPDD
LVGFRLFLPEGPCGHTVAKLQPGDVAAITTKVLRLNGEKILEDFSKRQQPKFKKEPPSAA
VTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDVSVVEAGLRVRKLEELIRGAQCVHSPRF
PAQYLKLRERMQIQEEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEVGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPSDQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgaatcgtgctacctcccccagatcctctggacctgccccttcgg
gccgtagagctgggatgcacagggcgttgggagctgctgaatgtgcctggggctccagag
agcacccttccccacggcctccctccctgtgccccagatctgcagcaagaagcagagcag
ttgtttctgtcatctcccgcctggctgcctctgcacggtgtggaacactcagcccgaaaa
tggcagaggaagatggatccttggtctctcctggccacactgggggccccagtcccctcc
gacctacaggcccaaagacacccaaccacaggccagatactaggctacaaggaggtcctg
ctagagaatacaaacctgtcagccacgacctccttgtctcttcgccggccacccgggccc
gtctcccagtccctgtgggggaatccaacacagtaccctttctggccagggggaatggac
gagcccaccataacagatctgagcactcgagaggaggctgaggaggagatagactttgag
aaagaccttcttactgttccacccggcttcaagaaaggcgtggactttgcaccagaggat
cacccagctccagctcccggcttgctcagcctcagccgtctgctggagcccctggatttg
ggtgggggcgatgaggatgagagtgaggcagtgggacagccaggcggtcccagacgggac
actgtttcagcctctccctgcagtgctcccctggcccgagcaagcagcttggagaaccta
gtgttgcaggaagcgtccacagctgtagctcccccagagcctcccaagcccccgcctcag
gagcagtgggccattcctgtggatgtcacctcccctgtcgatgatttctaccgactcatt
ccccagccagccttccggtgggcgtttgagccagatgtgtttcagaaacaggccatccta
cacttggaacggcatgactcggtctttgttgcggctcacacatccgcagggaagacggtt
gtggctgaatacgccattgcccttgcccagaaacacatgacgcgcaccatctatacttcg
cccatcaaggctctgagcaaccagaagttccgggacttccgaaacacatttggggatgtg
ggactcctcaccggggacgtgcagctgcacccagaggcctcctgcctcattatgacaaca
gagatccttcgctccatgctgtacagtggctcggatgtcatccgagacctggagtgggtc
atctttgatgaggttcactacatcaacgatgctgagcgtggagtcgtgtgggaggaggtg
ctcatcatgcttcctgaccacgtctccatcatccttctgagcgctactgtccccaacgcc
cttgaatttgctgactggattgggaggctgaagcgtcgccagatctacgtgatcagcact
gttgctcgcccagtccccctggagcatcatctcttcacggggaacagccccaagacccag
ggggagctcttcctgctgctggactcccgaggcaccttccacacaaaggggtactacgcg
gctgtggaggccaggaaggagcggatgagcaaacacgcccagacctttggggccaagcag
cccacgcatcagggggggcctgcacaggaccgtggcgtgtacctgtccctcctggcctcc
ctccgcacccgtgcgcagctgcccgtggtggtgttcaccttctcccgtggccgctgtgat
gagcaggcctcgggcctcacctcccttgacctcaccacgagttcagagaagagtgagatt
cacctcttcctgcagcgctgcctcgctcgcctccgaggctctgaccgccagctgccccag
gttctgcacatgtctgaactcctgcaccgtggcctgggtgtgcaccacagcggcatcctg
cccatcctcaaggagatcgtggagatgcttttcagccgtggcctggtcaaggtcttgttt
gccacggagaccttcgccatgggtgtaaatatgccagcccggacagtggtgtttgactcc
acgcgtaagcacgatggctccaccttccgggacctgctccctggggagtatgtgcagatg
gcgggccgggcgggccggaggggcctggaccccacgggcaccgtcatcctgctctgcaag
ggccgtgtgcccgagatggcggacctgcaccgcatgatgatggggaagccgtcccagctg
cagtcccagttccgcctcacgtacaccatgatcctcaacctgctgcgggtggatgccctc
agggtggaggacatgatgaagaggagcttctctgagtttccatcccgcaaggacagtaag
gcccatgaacagactctggctgagctgaccaagcggctgggggccttggaggagcctgat
gtaactggccaactcgttgacctgcctgcctattacagctacggggaggaactgacagag
acccggagcctgatccagcgacgcatcatagagtctgtgaatgggctgaaatctctctca
gcgggaagggtggtgattgtgaagaaccagaagcatcacaacgcactgggtgtgatcctt
caggtctcctcgagctccaccagcagagtattcacgactctggtcttgtgtgataagccc
atgtctgaggacccgcaggagagggggccagcctcccccagtgtgccctacccagatgac
ctcgtgggattcaggctgttcctgcctgaagggccctgtggccacactgtggccaagctc
cagccaggagatgtggctgccatcaccaccaaggtgctccggctgaacggggagaagatc
ttggaggacttcagcaagaggcagcaaccaaaattcaagaaggagcctccctctgcggcc
gtgacaactgctgtccaggaactactacgtctggctcaggcccacccagcaggaccccct
acccttgaccctgtcaatgacctgcagctcaaggatgtgtcggtggtagaggcggggctc
cgggtccggaagctggaggagctgatccggggggctcagtgtgtacacagtccccgtttc
cctgcccagtacctgaagctgcgggagcggatgcagatacaggaggagatggagcggctg
cgcttcctgctgtcggatcagtcgcttctgctgctccctgagtaccaccagcgagtagag
gtgctccgaaccctggggtacgtagatgaagtgggcaccgtgaagctggcagggcgggtg
gcttgtgccatgagcagccatgagctgctcctcactgaactcatgtttgacaacgcgctg
agcgcccttcggcccgaggagatcgcggccctgctctccggcctggtctgccagagcccc
ggggaccctagtgatcagctcccaagcacccttaaacagggggtggaacgtgtccgggct
gtggccaagcggatcggtgaggtgcaggtggcctgtggcttgaaccagacagtggaggaa
tttgtgggagagctgaattttggcctggtcgaggttgtgtacgagtgggcccggggcatg
cccttctctgagttggcagggctctcggggacccccgagggcctggtggtccgctgcatc
caacgcctggccgagatgtgtcgctcgcttcggggggcggcccgcctggtgggcgagcct
gtgctaggtgccaagatggagacggcagccaccctgctacggagggacatcgtctttgca
gccagcctctacacccagtga
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integrated database retrieval system
