Stenella coeruleoalba (striped dolphin): 307193247
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Entry
307193247 CDS
T11893
Symbol
DHX16, ACYUVP_018520
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform 1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
scoo Stenella coeruleoalba (striped dolphin)
Pathway
scoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307193247 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scoo03041
]
307193247 (DHX16)
Enzymes [BR:
scoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
307193247 (DHX16)
Spliceosome [BR:
scoo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
307193247 (DHX16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
AAA_30
SecA_DEAD
SRP54
nSTAND3
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
307193247
NCBI-ProteinID:
XP_079791020
LinkDB
All DBs
Position
10:complement(22796501..22811821)
Genome browser
AA seq
1045 aa
AA seq
DB search
MATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTDTLDVSGPAR
DFALRLWTKVPRKAVVEKPARAAEREARALLEKNRSYRLLEDSEESSEETVGRAGSSLRK
KLKKRKHLRKKRQEEEEEEEEEEFSEKEKRKTQGSKQQMEKPESEDEWERTERERLQDLE
ERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLA
KREREKLEDLEAELVDEEFLFGDVELSQHERRELRYKRRVRDLAREYRAAGEQEKLEATN
RYHMPEETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLV
LEEEETIEFVRATQLQGDEEPSAPPVPTQAQQKESIQVVRRSLPVFPFREELLAAIASHQ
VLIIEGETGSGKTTQIPQYLFEEGYTKKGVKIACTQPRRVAAMSVAARVAREMGVKLGNE
VGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLI
KDVARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACV
VSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQ
ARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSK
ASASQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLM
HFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSC
SEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQ
WCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTR
SGYRTVKQQQTVFIHPNSSLFEEQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY
KAKELEDPHAKKMPRKVGKTREELG
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggcggggctggagcgctgggtgcaagacgagctgcactcggtgctggga
ctgagcgagcggcatgtggcccagttcctcatcggtaccgcgcagcgctgcgcctcggca
gaggagttcgtgcagcgcttgcgagacaccgataccctggacgtcagtgggccggcccgg
gacttcgccttgagactctggaccaaggtcccaaggaaggctgtggtggaaaagccagct
cgggcagcagagcgagaggccagagccctgctggaaaagaaccgatcctacaggttgctg
gaggacagtgaggagagcagcgaggagactgtgggcagggccgggagcagtctccggaag
aagctgaaaaaacggaaacacctcaggaagaaacgtcaggaggaagaggaagaagaagag
gaggaagagttttctgagaaagaaaagaggaagacacaggggagtaaacagcagatggag
aagccagagtcagaggatgagtgggagcgaacagagcgagagcgccttcaggacctggag
gagcgtgatgcgttcgccgagcgggttcggcagcgggacaaggaccggactcgcaacgtc
ctggagcggtcagacaagaaggcttatgaagaggctcagaagcgcctcaagatggctgag
gaagaccggaaagccatggtccctgagctgcggaagaaatcccgccgagaatacctggcc
aagcgggagcgcgagaagcttgaggacctggaggctgagctggtggacgaggagttcctc
tttggggatgtggagctgagccaacatgagcggcgtgagctcagatacaagcggcgagtg
cgggatctggcccgggagtaccgggcggctggggagcaggagaagctggaggccaccaat
cgctaccacatgcctgaggagacgcgaggacagccagcacgagcggtggatctagtggag
gaggagtccggtgcccctggggaggagcagcggcgctgggaggaggcccggctcggggca
gcgtccctgaagtttggggcccgagatgctgcctcccaggagcccaagtatcagctggtg
ctggaggaagaggagaccatcgagttcgtccgggccactcagctccagggtgatgaggag
ccgtcagccccacccgttccaacccaggcccagcagaaggagtccatccaggtcgtccgc
cgcagcctcccagtgttcccgttccgcgaggagctgctggccgccattgctagtcatcag
gtcctcatcatcgaaggcgagacaggctcgggcaagaccacccaaatcccacagtacctc
tttgaggagggttacacaaagaaaggtgtgaagattgcctgcacccagccccggagagtg
gcagccatgagtgtggctgcccgagtggcccgggagatgggtgtgaagcttgggaatgag
gtcggctacagcatccgctttgaggactgcacatcagagcgaactgtcctgcgctacatg
acggatgggatgcttctccgggagttcctctctgagcctgaccttgcgagttacagcgtg
gtgatggtggatgaggcccacgaacggaccctgcacacagacattctctttgggttgatc
aaggatgttgctcgattccgacctgagctcaaggtcctggtggcttcagccacactggac
actgcccgcttttccaccttctttgatgacgcccccgtcttccggatccctggacgcagg
tttccagttgacatcttctataccaaggctccagaggcagactacctggaggcctgtgtg
gtgtctgtgctgcagattcatgtgacccagccccctggggatatcctggtgttcctgaca
ggacaggaggagattgaggctgcctgtgagatgctccaggatcgctgccgccgcctgggc
tccaaaatccgggagctcctggtgctgcccatttatgccaacctgccttccgatatgcag
gcgcggatcttccagcccacgccccctggggcacggaaggtagttgtggcaacgaacatc
gccgagacctcgctcaccatcgagggcatcatttacgtgctggacccggggttctgtaag
cagaagagctacaacccgcgcacgggcatggaatcgctcaccgtcacaccctgcagcaag
gcctcagccagtcagcgagctggtcgggcgggtcgggtggctgcagggaagtgcttccgc
ctgtataccgcctgggcctatcagcacgagctggaagaaaccacagtgcccgagattcag
aggaccagcctgggcaacgtcgtgttgctgctcaagagtttaggaatccacgacctaatg
cactttgatttcctggaccctccgccatatgagaccctgctgctggctttggagcagctg
tacgcgctgggggccctcaaccaccttggggagctcaccacgtctggtcgaaagatggca
gagctgccggtggaccccatgctgtctaaaatgatcctggcctctgagaagtacagctgt
tcggaggagatcctgacagtggctgccatgctctctgtcaacaactccatcttctaccga
cccaaggacaaggtcgtccatgccgacaatgctcgtgtcaacttcttcctccctgggggg
gaccacctggttctgctgaacgtttatacacagtgggctgagagtggttactcttcccag
tggtgctatgagaactttgtacagttcagatcgatgcgccgagcccgggatgtgcgggaa
cagctggaggggctcctggaacgcgtggaagtcggtctcagttcctgccagggggactat
atccgtgtccgaaaggccatcactgctggttacttttaccacacagcacggttgactcgc
agcggctaccgcacagtgaaacagcagcagacggtgttcattcatcccaactcttccctc
tttgaggaacagccacgctggttgctctaccacgaacttgtcttgaccaccaaagagttc
atgagacaggtattggagattgagagcagttggcttctggaggtggctccccactattac
aaggccaaggagctagaagatccccatgctaagaaaatgcccagaaaagtaggcaagaca
cgagaagagctagggtaa
DBGET
integrated database retrieval system
