Stenella coeruleoalba (striped dolphin): 307197379
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Entry
307197379 CDS
T11893
Symbol
SMARCB1, ACYUVP_022652
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform 2
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
scoo Stenella coeruleoalba (striped dolphin)
Pathway
scoo03082
ATP-dependent chromatin remodeling
scoo03250
Viral life cycle - HIV-1
scoo04714
Thermogenesis
scoo05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
scoo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
307197379 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
307197379 (SMARCB1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
307197379 (SMARCB1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
307197379 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
scoo01009
]
307197379 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scoo03021
]
307197379 (SMARCB1)
03036 Chromosome and associated proteins [BR:
scoo03036
]
307197379 (SMARCB1)
Protein phosphatases and associated proteins [BR:
scoo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
307197379 (SMARCB1)
Transcription machinery [BR:
scoo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
307197379 (SMARCB1)
SWI/SNF complex
307197379 (SMARCB1)
Chromosome and associated proteins [BR:
scoo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
307197379 (SMARCB1)
PBAF complex
307197379 (SMARCB1)
SWI/SNF complex
307197379 (SMARCB1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
307197379
NCBI-ProteinID:
XP_079799321
LinkDB
All DBs
Position
14:64275373..64302673
Genome browser
AA seq
385 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
MEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaagaccttcgggcagaagcctgtcaagttccagctggaa
gacgacggcgagttctacatgatcggctctgaggtgggaaactacctccgtatgttccga
ggttctctgtacaagagatacccctcgctctggaggcgactagccactgtggaagagagg
aagaaaatagttgcatcgtcacatggtaaaaaaacaaaacctaacactaaggatcatgga
tacacgaccctggccaccagcgtaactctgttaaaagcctccgaggtggaagagattctg
gatggcaacgatgagaagtacaaggccgtatccatcagcacggaaccccccacctacctc
agggaacagaaggctaagaggaacagccagtgggtgcccaccctgcccaacagctcccac
cacctggacgccgtgccctgctccaccaccatcaacaggaaccgcatgggccgggacaag
aagaggacgttcccgctgtgctttgacgaccacgacccagctgtgatccatgagaacgcg
tcccagcccgaggtgctggttcccatccgactggacatggagatagacgggcagaagctg
cgggacgcctttacctggaacatgaacgagaagctgatgacccctgagatgttttcagaa
attctctgtgatgacctggatttgaacccactgacgttcgtaccagccatcgcctccgcc
atcagacagcagatcgagtcctaccccacagacagcatcctggaggaccagtcagaccag
cgtgtcattatcaagctgaacatccacgtgggaaacatctccctggtggaccagttcgag
tgggacatgtcagagaaggagaactcgccggagaagtttgccctgaagctgtgctccgag
ctggggctgggcggggagttcgtcaccaccatcgcgtacagcatccggggacagctgagc
tggcatcagaagacctacgccttcagtgagaaccccctgcccacggtggagattgccatc
cggaacacaggcgacgctgatcagtggtgcccactgctggagaccctaacagatgccgag
atggagaagaagatccgcgaccaggacaggaacacaaggcggatgaggcgtctggccaac
actgccccagcctggtaa
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