Sulfidibacter corallicola: J3U87_09930
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Entry
J3U87_09930 CDS
T07864
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
scor
Sulfidibacter corallicola
Pathway
scor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
J3U87_09930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scor03400
]
J3U87_09930
Enzymes [BR:
scor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
J3U87_09930
DNA repair and recombination proteins [BR:
scor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
J3U87_09930
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
QTD52783
UniProt:
A0A8A4TTH5
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All DBs
Position
3461125..3464532
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AA seq
1135 aa
AA seq
DB search
MSARYLKPAILHGCLTERDHIIEASAGTGKTYTIEHLVIDLIYNGVKLPEILLVTFTEKA
TNELKARIRKKLIELVNLPAGWGAEHPLESCWVLTKPMRDRLEEALFAFENAAIYTIHGF
CNTVLREYAFENHQLFQMEQRRMERVFDEVFPRFIKSEVLSGRRPYTGLLTAYLSETPGG
LNQEHAGSNLATSLKRLLAKQGHLLPDLTGAEAAWQTWRDLADPVPIAEVLTRANLNANH
RKAFEKMVDWLGRHHADPEAQPAQMLAWLYEQKQAKAKSIMPFFDADAWKFNKAKPGKIN
GPGELPAPVLSFLHHTAALLPFACKLEVQLQLAMLPDLRAALDTEKQQRGWFDFDDMIRL
VAERIRDEGADGRLTAALRRKFRFAVIDEFQDTDAHQWTIFSRVFLDSAEHRLFLIGDPK
QAIYGFRGADVHTYLRARDELTARGGGRLSLDKNYRSSPALIDAVNAVFTSKYLFQGHID
YANPVEAGLPDVAGIDGRPPLTCLYVPPDDQGKDPSAHELKQGFAHWMGRTLVDMLASDP
ELKPKHIAVLTRNRREGETFGAVLAQFGVPFAFYKQGGLFQTRQARHFYDLLAAIEHDQD
DSATRKAMLTDFYSVPFVDLAATPRLPEELRRQMSEWRKRAYMDRDYRFLFNDIFNKTKI
FERLLFARDDERAVTNYEHLADVLKREGANLDLQQLLSMFHRLIANRIDADDEGLLRLET
EKEAVQIMTIHASKGLEFPVVFVYGGFSSSPHIDYHEFQDPRAGRVIDLAKQHAEEHQAA
IRAENERLYYVALTRAKYKMVLPLTENLKGDLGVLRDTLLTLKDADDQPNLEFLTATPGD
LRQEDMEHQYHDDTLREFEPEVAETSPDFQAILARHNRLRLTSYTKLAHGKDKAIAGLVL
ENLTRMYRNDETQASETLPGSGMPKGKATGNCLHEILEDTDHLNLAAYLERGMEAWKDDE
ETAQVIKGHLHAYELQDYFDEACSILWAALTAPILNGQAIGAIGEDHRLHEVDFHFPIRP
DDGKRVILNGSIDLAVRHEGRTYFADWKSDTLDRYDEDTLAEHVWREYRIQVEIYLLAVR
RWLRIESREDYDRLFGGFYYLFLRGMEQGGGVFFHRPNWEELLEYEARLKEHNYA
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgcgcgatacctcaagccggcgatccttcacggctgcctgaccgagcgcgatcac
atcatcgaagcttcggccggcaccggcaagacctacacgatcgagcacctggtgatcgat
ttgatctacaacggcgtcaagctgccggagatcctgctggtgaccttcacggaaaaggcg
accaacgaattgaaggcccgcatccgcaagaagctgatcgagttggtcaacctcccggcc
ggctggggtgccgagcatccgctcgaatcgtgctgggtgctgaccaaaccgatgcgcgat
cgattggaagaggcgctgttcgccttcgaaaacgcggcgatctacacgatccacggattc
tgcaatacggtgttgcgcgaatacgccttcgagaatcaccagctttttcaaatggagcag
cgccgcatggaacgcgtcttcgacgaggtcttcccgcggttcatcaagtcggaagtgctt
tcggggcgccggccctacaccggcttgctgacggcctacctgagcgagacgcccggcggc
ctgaaccaggaacacgccggcagcaacctcgccacgtccttgaaacggctgttggccaag
caagggcacctgttgcccgacctcaccggtgcggaagcggcgtggcagacctggcgcgac
ctcgccgatcccgtgccgatcgcggaagtgttgacccgcgcgaacctgaacgcgaaccac
cgcaaggccttcgaaaaaatggtcgactggctggggcggcaccacgccgatccggaagcg
cagcccgcccagatgctggcctggctgtacgaacagaagcaggcgaaggccaagagcatc
atgccgttcttcgacgcggatgcgtggaaattcaacaaggccaagcccggtaaaatcaac
ggtcctggagaattgcccgcaccggtgctcagtttcctgcaccataccgcggccctgctg
cccttcgcctgcaagctggaggtccagctccaactggcgatgctgcccgacctgcgcgcc
gcgctcgacacggaaaagcagcagcgcggttggttcgacttcgacgacatgattcggttg
gtcgcggagcgcattcgcgacgagggtgccgacggccggctgaccgcggccctgcgccgc
aagtttcgcttcgccgtcatcgacgagttccaggataccgacgcccaccagtggaccatt
ttctcccgtgtcttcctcgacagtgccgagcaccgcctcttcctgatcggcgatccgaag
caggcgatctacggcttccgcggcgccgatgtccacacctacctgcgcgcccgcgacgag
ttgacggcacgcggtggcggacgcctcagcctggacaagaactaccgctcgtcgccggcc
ctgatcgacgccgtcaacgccgtgttcacctccaaatacctgttccagggccacatcgac
tacgcgaatccggtcgaagcgggtctgccggatgtggcgggcatcgacgggcgtccgccg
ctcacttgcctctacgtgccacccgacgatcagggcaaggacccgtcggcccacgagctc
aaacagggtttcgcccattggatggggcgcaccctcgtcgacatgctggcaagtgatccg
gaactgaagcccaaacacatcgcggtcttgacccgcaaccgccgtgagggtgaaaccttc
ggcgcggtgctcgcccaattcggcgtgcccttcgcgttctacaagcagggcggtctgttc
cagacccgccaggcccgccatttctacgatctgctggcggcgatcgagcacgatcaggac
gacagtgccacacgcaaggcgatgttgacggatttctacagcgtgcccttcgtggacctg
gcggccacgccccggcttcccgaggagttgcggcgccaaatgagcgagtggcgcaaacgg
gcctacatggatcgcgactaccgcttcctgttcaacgacatcttcaacaagaccaagatc
ttcgagcgcctactcttcgcccgcgacgacgaacgcgcggtcaccaactacgagcacctg
gccgacgtgctcaaacgtgagggcgccaatctggacctccagcagttgctcagcatgttc
caccgcttgatcgccaaccgcatcgacgccgacgacgaggggctgttgcggctggagacg
gaaaaggaagcggttcagattatgacgatccacgccagcaagggtctggagttcccggtg
gtgttcgtctacggcggcttttccagctcaccgcacatcgactaccacgagttccaggat
ccccgggcgggccgcgtgatcgatttggccaaacagcacgcggaggaacaccaagccgcg
atccgcgcggaaaacgagcgcctgtattacgtggccctgacccgcgccaagtacaaaatg
gtcctgccgctcacggagaacctgaagggcgatctgggcgtgctgcgcgacacgttgctg
acgctgaaggacgcggacgaccaaccgaacctcgaattcctcaccgcgaccccgggcgac
ctgcgccaagaggacatggagcatcagtaccacgacgacaccctgcgcgagttcgaaccg
gaggtcgcggaaacctcgcccgatttccaggccatcttggcgcgccacaaccggctgcgg
ctgacgagctacaccaagctggcccatggaaaggacaaggcgatcgcaggcctggtcctg
gagaacctgacgcggatgtaccgcaacgacgaaacccaggcgagcgaaaccctgccgggt
tcgggcatgcccaagggcaaggcgaccggcaattgcctgcacgagatcctggaggacacg
gaccacctgaacctcgccgcgtacctggaacgcgggatggaggcgtggaaagacgacgaa
gaaacggcccaggtcatcaaaggccatctgcacgcctacgaactgcaggattatttcgac
gaagcctgttcgatcctgtgggcggcgttgaccgcaccgatcctgaacggccaggcgatc
ggcgcgatcggcgaggatcaccgcctgcacgaggtggatttccacttcccgatccggccc
gacgacggcaagcgcgtgatcctgaacggctccatcgatttggcggtccgccacgaaggc
cgcacctatttcgcggactggaagagcgacacgctggatcgctacgacgaagacaccctg
gccgagcacgtatggcgcgagtaccgaatccaggtggagatctacctgctggcagtgcga
cgctggttgcgcatcgagtcccgcgaggattacgaccgcttgttcggcggcttttactac
ctgttcctgcgcggcatggaacagggcggcggcgtctttttccaccgccccaattgggaa
gagttgttggagtacgaggcccggctgaaggaacacaattacgcgtga
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