Sulfidibacter corallicola: J3U87_14930
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Entry
J3U87_14930 CDS
T07864
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
scor
Sulfidibacter corallicola
Brite
KEGG Orthology (KO) [BR:
scor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scor03016
]
J3U87_14930
Enzymes [BR:
scor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J3U87_14930
Transfer RNA biogenesis [BR:
scor03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J3U87_14930
Prokaryotic type
tRNA splicing ligases
J3U87_14930
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QTD53744
UniProt:
A0A8A4TXA4
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All DBs
Position
4991093..4992322
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AA seq
409 aa
AA seq
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MSHSGFRLIETEHGVPIKAWIKGVPFDPGAEEQLRKTAQLPIIHKWIAVMPDVHKGLGAT
VGSVVPTKNAIIPAAVGVDIGCGMMAVRTTLNAAQLPENLRRWRTAIEKAVPHGRTSHGG
RRDKGSWQDVPNRVSKTWAHLSRGFQAITEKHPRIAKSNNLHHLGTLGTGNHFIEVCLDE
EDRVWIMLHSGSRGVGNRIGSYFIELAKNDMRGWIANLPDKDLAYLREGTEHFDDYVEAV
SWAQEFARHNRAIMMDHVLGAIAQLKGVPAFKTDNMAVNCHHNYVNMESHFGEDVWVTRK
GAVRAGEGELGIIPGSMGARSFIVRGRGNPDSFHSCSHGAGRVMSRTKAKKRFTLDDHIK
ATEGIECRKDTDVIDETPAAYKPIDSVIAAQSDLVEVLHTLRQVVCVKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgagtcactcaggttttcgtttgatcgagaccgagcacggagttcccatcaaggcttgg
atcaagggtgttcccttcgatcctggtgccgaagagcaactccgcaagacggcccaattg
ccgatcattcacaaatggatcgcggtcatgcccgatgttcacaagggcttgggtgccacg
gtcggtagcgtggttcccacgaagaacgccatcattcccgccgccgtcggtgtcgatatc
ggttgtggcatgatggccgttcgcaccactttgaacgccgcccaactgccggaaaacctg
cggcgttggcgaaccgccatcgagaaagccgtaccgcacggccgcacgagtcacggcggt
cgacgcgacaagggttcgtggcaggatgtgcccaatcgggtttcgaaaacctgggcccac
ctttcgcgcggctttcaggccatcaccgaaaaacaccctcgtatcgccaaatcgaacaac
ctgcaccacttgggtaccctgggtaccggaaaccacttcatcgaagtgtgtctcgacgag
gaagatcgcgtgtggatcatgctgcacagcggatcgcgcggtgtggggaaccgaatcggt
agctattttatcgaattggccaaaaacgacatgcggggttggatcgcgaatctgccggac
aaggacctggcttatctgcgcgaagggaccgaacatttcgacgactacgtggaagcggtg
tcctgggctcaggagttcgcacgccacaaccgggcgatcatgatggatcacgtgctgggg
gccatcgcccaactcaaaggcgttccggccttcaagaccgacaacatggcggtcaactgc
caccacaactacgtcaacatggaatcccatttcggtgaagacgtctgggtgacccgcaaa
ggggccgtccgcgccggtgagggtgagctgggcatcattccggggagcatgggcgcgcga
tcgttcatcgtccgcggtcgaggcaatcccgacagtttccatagctgcagtcacggtgcg
ggtcgcgtcatgtcgcgaaccaaagcgaaaaaacggttcacgctggacgaccatatcaag
gcgaccgaaggcatcgaatgccgcaaggataccgacgtcatcgatgaaacgccggccgcc
tacaagccgatcgattcggtcatcgccgctcaatccgatctggtcgaggtactccatacc
ttgcgtcaggttgtctgcgtgaagggctga
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