Sulfidibacter corallicola: J3U87_15285
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Entry
J3U87_15285 CDS
T07864
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
scor
Sulfidibacter corallicola
Pathway
scor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J3U87_15285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scor03019
]
J3U87_15285
Enzymes [BR:
scor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J3U87_15285
Messenger RNA biogenesis [BR:
scor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J3U87_15285
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_22
Sacchrp_dh_NADP
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QTD53812
UniProt:
A0A8A4TXX0
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All DBs
Position
5087358..5088794
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AA seq
478 aa
AA seq
DB search
MSFERFGLSTEILRAVADQGYSQPTPIQAKAIPVVLEGTDLLASAQTGTGKTASFTLPML
QRLSRRRSGRGKPIVRGLVLTPTRELAAQVGDNVKAYGKYLSLKSAVIFGGVNIQGQIRA
LRNGVDILVATPGRLLDHLQRGTLDVTGIEMLVLDEADRMLDMGFIHDIKKVLAYLPEKR
QNLLFSATFSNEIKALANRLLDHPTSVEVARRNTASEQVEQLVHPVDRHRKREMLAHLIQ
RNDWRQVLVFTRTKHGANRLAQQLGRQNIDAAAIHGNKSQGARTKALAKFKSGQIRVLVA
TDIAARGLDIDKLPHVVNFELPNVPEDYVHRIGRTGRAGCEGIAVSLVCVDEHKLLRDIE
GLLKVSITKETIRGFEPDASLAPEPIRQGRKPAAKRGHREGASGQNRSRNHGEPRKEKKR
DESGEKPRGRVARDRQAKGNQQDPRTGQANEVPRKSGSRKRRRPPRLASSRPSPFSDI
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaacgtttcggtctttcgaccgagattttgcgtgccgttgccgatcagggc
tacagccaacccacccccattcaagccaaagccattcccgtcgttctcgagggcacggac
cttctcgccagtgcccagaccggtacgggcaagaccgcgagctttaccttacccatgctg
caacgcttgagtcgtcgccgttccggccgcggtaagccgatcgttcgcgggctcgtgttg
acgcccacacgtgagctggcggcgcaggtcggtgacaacgtcaaggcctacggcaaatac
ctgtcgctcaaatctgcggtcatctttggtggtgtcaatatccagggccagatcagggcg
ttgcgaaacggtgtcgacatcctcgtcgccacgccggggcgcttgctcgatcacttgcaa
agaggcacgctggatgtcaccggcatcgaaatgctcgtgctcgacgaggccgaccggatg
ctcgacatgggtttcattcacgacatcaaaaaggtgctcgcctatttgccggagaaacgg
caaaacctgcttttttccgcgaccttttccaatgaaatcaaagcgctggccaaccgtctg
ctcgatcatcccacttcggtggaagtcgcccgccgcaacacagcttccgagcaggtcgag
cagttggtgcacccggttgaccggcatcgcaagcgcgaaatgctggcccatctcatccaa
agaaacgattggcgccaggttctggtgttcacccgtaccaagcacggtgccaatcgactg
gcgcaacagttggggcgccagaacattgacgcggcggccatccacggtaacaagagccag
ggggcgcgtaccaaagccttggcgaaattcaagagcggccagattcgcgttctggtcgca
accgatatcgctgcccgcggtctggatatcgacaaactcccccacgtggtcaatttcgag
ttgcccaacgtgcccgaggattacgtccaccgcatcggtcgcacgggtcgcgccggttgc
gagggcatcgcggtctccctggtatgtgtcgacgagcacaagttgttgcgcgatatcgaa
gggctgttgaaggtatccatcacgaaagagacgattcggggtttcgaacccgatgccagt
ctcgctccggaacccattcgccagggccgtaagcccgcggcgaagcgtgggcatcgcgaa
ggcgcgagtggtcagaaccgttcgcgcaatcacggcgaaccccgcaaagagaaaaaacgc
gacgaatcgggcgagaagccgcggggacgcgtggctcgggaccgccaagccaagggcaat
caacaggatccacgtaccggacaggccaatgaggtgccccgcaaaagcggatcccgcaaa
cgacgaagacctccccggctcgcttcgtctcgcccttcaccgttcagtgacatttaa
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