Sulfidibacter corallicola: J3U87_16720
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Entry
J3U87_16720 CDS
T07864
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scor
Sulfidibacter corallicola
Pathway
scor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J3U87_16720 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scor03400
]
J3U87_16720 (mfd)
Enzymes [BR:
scor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J3U87_16720 (mfd)
DNA repair and recombination proteins [BR:
scor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J3U87_16720 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QTD54091
UniProt:
A0A8A4TXY3
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All DBs
Position
5516446..5519841
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AA seq
1131 aa
AA seq
DB search
MVYFQWHGEAEAVRRLYGLRGSAGLHHLVARGGKGVVVTHDAKRIHTLAQSLRALAPEAL
VFELPPLDGSPFAFTPVHPQTRRDRLACFDALLSGRWDFIVTQTRMFLEPLAPREKLATP
RLDLVAGNEYDLAELCRTLVDMGYLASDLVSQPGDFARRGGILDIYSSVDERAWRLDFWD
DELEEIRELDPGTQRSIGQCERIHLLPLFEWRVGPDEAETFARKGGEQWNQTDARKHFLS
LVAELRDRGRFSGYLHWAALFFPEATHLPDLISEPVTYYLEDWDGAQEIQEQYLTQLELQ
GEALGSGQLHAPLRVLTGRKDPRIVDLPETATALSLHHLKMERVDEEYITQSVPAYKNDV
RRFVDHWKQQAKRLAIVVVSDNSGALKRLEETIEDDGFFVHPLTLPIPDTLEPGFYMARG
DLETGFQWPDRHLVVLSGNDIWSKTPRTRKPAAGKKTFQAEFRDLKVGDFVVHDDYGIGK
FLGLVEMEAGGASHEMMALTYKNDQKLYMSLNQIHLVQRFGAADSQVQLDKLGGTGWERT
KTRVKRAVREMAGELIQLYAQRSLVTRHAYGPDTEWQAEFEEAFPHEPTQGQLTAISEIK
RDLESTKPMDRLLVGDVGFGKTEVAMRMAFKVVMEGYQVAVLCPTTVLAFQHYHTFKNRF
ANFPVSIGWISRFSSPSATKRALSGLADGKVDIIVGTHRLLSKDIQFKNLGAVVIDEEQR
FGVAHKERLKQFRKQIDVLSMSATPIPRTLNMSLSGIRDISVIETPPRNRLAISTTVTES
REGTIKNAVEFELARGGQVFFIHNRVETMDQVVAGLGQLMPGLRISVAHGQMEPKRIERE
MLAFMEHETDVLVASTIIENGVDIPNANTMIVNRSDMFGMSQLYQLRGRIGRSDRPAFAY
LLVPPRARMSTQARMRLATLEEFSDLGAGFRIAARDMELRGAGNLLGGRQAGHINTIGYD
MFVKLLEEAVSELRGTQVQDRIACLVNLNFGAAIPRRYVEETNQRLHYYKQLAGAESDAH
IDEICEIMVDCYGSLDDPVLQLCREHRLRLFLAEHRVLNVERERDTVRLRFHETASVKME
VVLGWIQKGNGVTLTPEGVLTLPLPSKNPEEAIDFVRESVEALVGPKESAE
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atggtctattttcagtggcatggtgaagccgaagcggttcgccgactctacggactgcgt
ggctcggccgggctccaccatctggtggcgcgagggggaaagggcgtcgtggtcacccac
gatgccaagcggattcacacactggcccagtccctgcgcgccttggcgcccgaggccctg
gtcttcgagctgccgcccctggatggatcgcccttcgccttcaccccggtacacccacag
acccgtcgcgatcgattggcctgcttcgacgccctgctctccggcaggtgggacttcatc
gtcacccagacgcgcatgtttctggagccgctcgcaccccgtgaaaagcttgcgaccccg
cgtctcgacctggtcgcgggaaacgaatacgacctggccgaactctgccgaaccctcgtc
gacatgggatacctggcttcggacctggtgagccagcccggtgatttcgctcgtcggggc
ggcattctcgatatctacagttccgtggacgagcgcgcctggcgactcgatttttgggat
gacgaactggaggagattcgcgaactggatcccggcacgcagcgctccatcggccagtgc
gagcgcatccacctgctgccgctgttcgagtggcgcgtgggccccgacgaggccgagacc
ttcgcgcgcaagggcggcgaacaatggaatcaaacagatgcccgaaaacactttttgtcc
ctggtcgccgagctgcgcgatcgcggccgtttttccgggtaccttcactgggccgcgctg
ttctttcccgaagccacccatctgcccgatctcatttccgaaccggtgacctactacctc
gaggattgggacggggcccaggagattcaggaacagtacctgacccagctcgagcttcag
ggcgaggccctgggcagcgggcaattgcatgcgcccctgcgggtcctgaccggaaggaag
gacccgcgcatcgtcgatctgcccgagacggcgaccgcgctttcgctgcaccacctcaag
atggagcgggtcgacgaggagtacatcacccaatcggtgccggcctacaaaaacgacgtc
cgtcgcttcgtggatcattggaaacagcaggcgaaacgactggcgatcgtcgtggtctcg
gacaacagcggcgccctcaaacggctggaagagaccatcgaggacgatggcttcttcgtc
catccgctgacgttgccgatccccgacaccctggaaccgggcttctacatggcgcgcggc
gatttggagacgggcttccaatggcccgatcgacacctggtcgtactcagcggcaacgat
atctggtccaagacgcctcgcacgcgaaagcccgcggccggcaagaagacgttccaggcc
gagttccgcgatctgaaggtcggcgatttcgtcgtccacgacgactatggcattggcaag
ttcttgggtttggtagagatggaggcgggaggcgccagccacgagatgatggcgctgacc
tataaaaacgatcagaaactctacatgtcgctaaaccagatccatctggtccagcgattc
ggcgccgccgacagccaggtgcagttggacaaactgggcgggaccgggtgggagcgcacc
aagacgcgggtcaagcgtgcggtgcgcgagatggccggcgagttgattcaactgtacgcc
cagcgcagcctggtcacccgccatgcctacgggcccgataccgaatggcaggccgagttc
gaagaggcctttccccacgagccgacccaaggccagttgacggcgatttccgagatcaag
cgcgacctggagagcaccaaaccgatggaccgcctgttggtcggcgacgtgggattcggc
aagaccgaggtcgccatgcgcatggccttcaaggtggtcatggaaggctaccaggtcgcg
gtgttgtgccccaccaccgtcctggcctttcagcactaccacaccttcaagaaccgattc
gccaacttcccggtgagcatcggctggatctcgcgcttcagctcgccctcggccaccaag
cgcgccctgtccggattggccgacggcaaggtggacatcatcgtggggacccaccgcctg
ctgagcaaggatatccagttcaagaatctcggggcggtcgtcatcgacgaagaacagcgc
ttcggagtcgcccacaaggaacgcctcaagcagttccgtaaacaaatcgacgtcttgagc
atgtcggccacgccgattccgcgcacgctcaacatgtcgttgtcggggattcgcgatatt
tcggtcatcgaaaccccaccgcgcaaccgcctggcgatcagcaccacggtgaccgaatcg
cgcgaaggcaccatcaagaacgccgtcgagttcgagctcgcccgcggcggccaggtcttt
ttcattcacaaccgcgtcgaaacgatggaccaggtcgtcgccgggttgggccaattaatg
ccgggcctacggatctccgtggcccacggccagatggagccgaagcgcatcgaacgggag
atgctggccttcatggaacacgagacggatgtcctggtggcctcgaccatcatcgagaac
ggtgtagacattcccaacgccaatacgatgatcgtcaaccgctcggacatgttcggcatg
agccagctctatcagcttcgcggccgcatcggccggtccgatcggccggccttcgcctac
ctgctggtgccgccccgggcccgcatgtcgacccaggcgcggatgcggctggccacgctc
gaagagttctccgacctgggtgccggatttcgcatcgccgcccgggacatggagttgcgc
ggtgcgggcaacctcctgggtggccgacaggcgggccacatcaacaccatcgggtacgac
atgttcgtgaagctgctcgaggaggccgtgagcgagttgcgcggcacccaggttcaagat
cgcatcgcctgtctggtgaacctcaacttcggtgcggcgattccgcgccgctacgtggag
gagaccaaccagcggctgcactactacaagcagttggccggtgccgagtccgatgcccac
atcgacgagatctgcgaaatcatggtggattgctacggctcgctcgacgatccggtcctc
caattgtgtcgggaacaccgcctgcgcctgttcctggccgagcaccgcgtgctgaacgtg
gagcgcgagcgcgacaccgttcgcctgcgcttccacgagaccgcttcggtcaagatggaa
gtcgtgctgggctggatccagaaggggaacggggtgaccttgacgccggaaggggtgctg
acgctcccgttaccctccaaaaatcccgaggaagcgatcgatttcgtccgggaatcggta
gaggcgctggtagggcccaaagaatcggccgaatag
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integrated database retrieval system
