Sulfidibacter corallicola: J3U87_16920
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Entry
J3U87_16920 CDS
T07864
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scor
Sulfidibacter corallicola
Pathway
scor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J3U87_16920 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scor03019
]
J3U87_16920 (recQ)
03400 DNA repair and recombination proteins [BR:
scor03400
]
J3U87_16920 (recQ)
Enzymes [BR:
scor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J3U87_16920 (recQ)
Messenger RNA biogenesis [BR:
scor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J3U87_16920 (recQ)
DNA repair and recombination proteins [BR:
scor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J3U87_16920 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
QTD54130
UniProt:
A0A8A4TXB7
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All DBs
Position
complement(5575303..5577141)
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AA seq
612 aa
AA seq
DB search
MTTNTQHNLAVEALHQVWGYSEFRPLQQETIEAIQAGTDTLTVLPTGGGKSLCYQIPAAV
MQGTAIIISPLISLMEDQVKSLQLLGVPAAFLNSSLNGDQVRRIKSDFFNSRLKLLYVSP
ERLLLDHFLEELKQVHISFFAVDEAHCISQWGHDFRPEYTKLRTLRETFPDVGIHGFTAT
APPEVQREIMGQLALRDAQLFVGSYHRPNLFYRAVRRNKFNKQLLDILKQFHRGDMGIVY
CLTRRETESIAAVLREQGYKALPYHAGLSQEQRKRNQDLFSQEQVQIIVATVAFGMGIDQ
SNVRFVIHNGMPRTLSHYQQEAGRAGRDGLPAHCILVFSAKDIQFWKRMIEEEGVLVGPR
TAQLQDIINYATQLKCRHRVLIEYFGQAFEKANCGSCDICLGEVESIGEARTYSRMILSA
VLKLRQTFGGAYISQVLTGSKDQKVMRNGHDQLSVHGLLKDFSQHQVHDWINQLESQGYL
ARSTGEYPVIKVAGPGFWLLRPEKYEKSEKDVPVFLIETRRQAKAKRPAITDTSFDHALF
DVLREKRMEIATRLGVPAFIVFGDRSLQDMARVKPTSREEFLRVFGVGQAKLEKFGEPML
VAIREYQAKNGS
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgactacgaacacccaacataatctcgccgtcgaagccctgcaccaggtttggggttat
tccgagttccgcccccttcagcaggagaccatcgaggccattcaagccggcaccgatacc
ctgaccgtgcttcccacgggcggcggtaaatcgctgtgttatcaaattccggccgcggtc
atgcagggtaccgccatcatcatctcgccgctcatctcgctaatggaagaccaggtcaag
agcctgcaactgctgggcgtgcccgcggcgtttctcaacagttcgctgaacggcgaccag
gttcgccgcatcaagtccgattttttcaacagccggctgaaactgctctacgtttctccc
gaacgcctcctgttggaccactttctcgaagaactgaaacaggtccacatcagctttttc
gcggtggacgaagcccactgcatcagccagtgggggcacgacttccggcccgagtacacc
aaattgcgcaccttgcgggagaccttccccgacgtgggcattcacggtttcaccgcgacc
gcgccgcccgaggtccagcgcgaaatcatggggcaactggcgctgagggacgcgcaactg
ttcgtcggcagctaccaccgccccaacctgttctaccgagccgtgcgccgcaataaattc
aacaagcaactgctggacatcctgaaacagttccaccgcggcgacatgggcatcgtgtat
tgcctgacccgtcgcgaaacggagagcatcgccgcggtgctgcgcgagcaaggctacaag
gccctgccctaccacgccgggctcagccaggaacagcgcaagcgcaatcaggatctcttc
tcccaggaacaggtccagatcatcgtggcgaccgtcgccttcggcatgggtatcgatcaa
tccaacgtgcggttcgtcatccacaacggcatgccgcgcaccctgtcccattaccagcag
gaggcgggacgcgccggtcgtgacggattgccggcccactgcattctcgttttctcggcc
aaggacattcaattctggaaacgcatgatcgaggaagaaggcgtgctggtgggtccgcga
acggcccaactccaggacatcatcaactacgccacccagctcaaatgccgccatcgcgtc
ctgatcgagtacttcggccaagccttcgaaaaggccaactgcggatcctgcgacatttgc
ctgggcgaggtcgaaagcatcggtgaagcccgcacctacagccgcatgatcctttccgcg
gtcctcaagttacggcagacattcggcggcgcctacatttcccaggtgctcaccggctcc
aaggaccagaaggtcatgcgcaacggccacgaccaactgtcggtccacggcctgctcaag
gacttcagccaacaccaggtccacgactggatcaaccaattggaaagtcagggctacctg
gcccgcagcaccggggaatatccggtcatcaaggtcgccgggcccggcttctggctgttg
cgtcccgagaaatacgaaaaatccgagaaggacgtcccggtctttctgatcgaaacgcgt
cgccaggccaaggccaagcggcccgcgatcacggatacctccttcgaccacgccctcttc
gacgtcctgcgcgagaaacgaatggagatcgcgacacggctcggtgtgccggcctttatc
gtgttcggcgaccgcagccttcaggacatggcccgggtcaaacccaccagccgcgaggag
ttccttcgcgtattcggtgtgggccaagccaagttggaaaaattcggcgaacccatgctg
gtggcgattcgggaataccaggcgaaaaacggaagctga
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