Sulfidibacter corallicola: J3U87_18115
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Entry
J3U87_18115 CDS
T07864
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
scor
Sulfidibacter corallicola
Pathway
scor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
J3U87_18115 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scor03400
]
J3U87_18115 (recD)
Enzymes [BR:
scor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
J3U87_18115 (recD)
DNA repair and recombination proteins [BR:
scor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
J3U87_18115 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
UvrD-helicase
AAA_16
SH3_13
NAT10_TcmA_helicase
SLFN-g3_helicase
AAA_22
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QTD54365
UniProt:
A0A8A4U6I5
LinkDB
All DBs
Position
complement(5881615..5883744)
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AA seq
709 aa
AA seq
DB search
MTGSFFLASESGAPVFSIVDRQFSALGTVLQQLLGVDGTHLLPSAEGRLFERAVQYGIAP
ADFYATRKIASLARCPSPLLLTVLLCEKLASGDGNTYLNIETEALAARFVSLGFESEEAN
EMARQVPAMIASEPDLFGTATPSMPQAAPFIVNANGTELYRHSFHVAEQSISIELGKCLK
RPWARHDRLEQAFERIVSQFPAGSRPWTDEDGIGAAPISLAPEQLAAAMTAVHAPLTFIS
GGPGTGKTSIVLTILRLLAELGVAPGAIQLAAPTGRAANRIGESLERGFGTLAPEARCDA
WRAQLPAPKTVHRLLGWSPHRNQFNHGPFNPLSAEWLIIDESSMLDVLMAERLLLAMKPG
ARLIMLGDADQLPSVDAGAVFRDVTSHARPAPGTARLESLIADLDDRRRVAGSGSPEARL
AAHVVQLQRTFRQSDDFGGRHVRAVAAACNRMDSNALLDACGEDAIRVLNPDTLPPPLDG
VSSLDPTDCSLLDLVDLLRHRFYEPYRDLARRTYTSLESDTESISRMFRTLDEMRLLCLT
HRGTFGVETLNQLFKERIFRGEGPFLPGAPWMVTRNDYRQGLFNGDIGVSLWFASPEGGA
ARWLVFRTETGFRRIPFGNQVGLTPAYATTVHKSQGSEAGHVVLVLPERKNALCRKELIY
TAVTRAKKSVLIYGSRQVLRGAVEESMERASGLRRNLVRTLATGAEERH
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgaccggatccttcttcctggcttcggaaagtggggcgcccgtgttttccatcgtcgac
cgtcaattttccgccctcggaaccgtcctacaacagctcctcggagtagacggcacccat
ttgttgccatcagcggagggacgtctcttcgaacgagccgtccagtacggcatcgcgccc
gccgacttctacgccacccgaaaaatcgcctcgctcgcgcgctgccccagtccgttgctt
ctcacggtgcttctctgtgaaaaattggccagcggagatggcaacacctacctgaacatc
gagaccgaggcgttggcggcgcgcttcgtctcgctcggtttcgaatccgaggaagcgaac
gagatggcgcgacaggtgccggccatgatcgcgagcgagccggacctgttcggaacggcg
accccctcgatgccgcaagccgcgcccttcatcgtcaatgccaatggcaccgaactctac
cgtcacagctttcacgtggcggagcaatccatttcgatcgaattgggaaaatgcctcaaa
cggccgtgggcacgccacgatcggctggagcaggcgttcgaaagaatcgtgtcccagttt
ccggcgggcagccgtccttggaccgatgaagacgggatcggcgccgcgcccatcagcctt
gcgccggaacaattggccgcggccatgaccgcggttcacgcgcccctgaccttcatttcg
ggtggacccggtacgggaaagacatcgatcgtactcacgatcctgcggttactggccgaa
ttgggcgtcgcgccaggcgccatccaactggccgcgcccaccggccgcgcggccaaccgc
atcggcgaatccctggagcgcggtttcggtaccttggctccggaggctcgatgcgatgcc
tggcgtgcacagctccccgcccccaagaccgtccaccgcctcctgggctggtcaccccat
cgtaaccaattcaaccacgggccattcaacccgctatccgccgagtggttgatcatcgac
gaaagctcgatgctcgacgtgctgatggccgaacggctgcttctcgccatgaagcccgga
gcgcgcctgatcatgttgggcgacgccgatcaacttccctcggtcgatgccggagccgtt
ttccgcgatgtgaccagccatgcccgacccgctccggggacggctcgactcgagagcctg
atcgcagatctcgacgatcgccgccgagtggccggcagcggatcaccggaggcgcgactg
gcggcccatgtggttcaactgcagcgaactttccgtcaaagtgacgattttggcggccgc
catgtgcgcgccgttgccgctgcctgtaaccgcatggatagcaacgccttgctcgacgca
tgcggcgaagatgcgatccgcgtcctgaaccccgatacgctgcctccccccttggacggc
gtgtcttccctggaccccaccgattgttcgctactcgacctggtggacctgctgcgccat
cgtttctacgaaccatatcgcgacctggcacgtcgcacctacacctcgctcgaaagcgac
accgaatccatttcacgcatgttccgaaccttggacgagatgcgtcttttgtgcctcacc
catcgcggcactttcggagtggaaaccctgaaccagctcttcaaggaacgcatctttcgg
ggagagggtccctttttgcccggcgcgccttggatggtgacccgcaacgattaccgccag
ggcctgttcaatggggatatcggggtcagcctctggttcgcttcaccggaaggcggtgcg
gcgcgctggttggtgtttcgcacggaaaccggattccgccgcatcccgttcggcaatcag
gtcggcctgacaccggcctatgccaccaccgtccacaagagccagggctccgaagcgggt
cacgtggttctggtcctccccgaacggaagaatgccttgtgtcgcaaagaactgatctac
acggccgtgacccgggccaagaaatccgtcctgatctacggctctcgccaagtgctgcgc
ggcgccgtcgaggaatcgatggaacgcgcatccggattgcgccgcaatctggtccggacg
ctggccacgggagccgaggagcgccactga
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