Sulfidibacter corallicola: J3U87_28105
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Entry
J3U87_28105 CDS
T07864
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
scor
Sulfidibacter corallicola
Pathway
scor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scor00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
J3U87_28105
09124 Replication and repair
03420 Nucleotide excision repair
J3U87_28105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scor03021
]
J3U87_28105
03036 Chromosome and associated proteins [BR:
scor03036
]
J3U87_28105
03400 DNA repair and recombination proteins [BR:
scor03400
]
J3U87_28105
Enzymes [BR:
scor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
J3U87_28105
Transcription machinery [BR:
scor03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
J3U87_28105
Chromosome and associated proteins [BR:
scor03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
J3U87_28105
DNA repair and recombination proteins [BR:
scor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
J3U87_28105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
PhoH
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
QTD49467
UniProt:
A0A8A4TIZ9
LinkDB
All DBs
Position
9284064..9286433
Genome browser
AA seq
789 aa
AA seq
DB search
MTAAEKPCLAISVRDLVYFALRGGDLFQHYFQAPSGLQGIRGHQRLQRKRGEGYRAEVSV
KLHHDCGPFELVIGGRIDGVFAERAPVVIEEIKTTLLEFDRIPPHATSLHLGQAKLYAYI
YAREHELDEAAVRLTYLHLEHDETREIESILDFHALTVFFNEVIETYREWAETQFAWRQE
RDRSIADLEFPLGGFRPGQRRLAAEVYRAARDGRTLFAEAPTGTGKTLATLFPAIKAVAE
GHVEKVFFLTAKNTGREAAQRAHRILTDSGLRYKALTLTAKDAICFHENGPCRIEQCEYT
RGYYDRVRDALTDLFASDALHREAIVDVARRHRVCPFELSLDMAVWADLVICDYNYAFDP
GVYLRRFFGEDKSTHMLLIDEAHNLIDRARGMFTAELSKREVLEVRRTWSKRAPMVRRAL
NGVNRQLLKMGREMDAAGLKEQTLTEAPKALIPPLQKLVAAYSQWLTEAEPGLFGEEPPE
LFRTVRQFLRCAEHYGDHFATIYRRRGKDLAVKVYCKDPAPQLKARLAKVRAATYFSATL
TPFGYHRALLAAKERDPQLRLPSPFDPNHLCLLVADGISVRFRDRERTLGDVVSMIRAVT
HSRSGNYLIFLPSYRYLNLITENFAQKHDDVEILIQEPGMDEAQRIAFLKEFEERDASTL
VGFAVMGGIFGEGIDLRGERLIGVIVVGVGLPQICIERNLIREHFEENGFDFAYRVPGMQ
RVLQTAGRVIRTERDRGVVCLIDSRFSEPDYARLFPAHWRPERVRHAAQVTERLARFWSA
EADPDEQPS
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctgccgagaagccctgcctcgccatatccgttcgcgacctcgtttacttcgcc
ctgcgaggcggcgatctcttccaacactacttccaagcgccgagcggcctgcagggaatc
cgcggccaccagcgacttcagcgcaagcgcggtgaaggctatcgcgccgaagtctccgtg
aaacttcaccacgattgcggacccttcgagctggtcatcggcggcagaatcgacggcgtc
ttcgcggaacgggcgcccgtggtcatcgaggaaatcaagaccacgctgctggagttcgac
cgcattccgccccacgccacgagtctccatctgggccaagccaaactttacgcctatatc
tatgcccgcgaacacgagctggatgaggcagcggttcgcctgacgtacctccacctcgag
cacgacgagactcgggaaatcgagtccattctcgatttccacgcgctgacggtgtttttc
aacgaagtgatcgaaacgtatcgcgagtgggccgaaacgcagttcgcctggcgacaagag
cgcgatcgctcgatcgccgacctcgaattcccgctcggcgggtttcggcccgggcagcgg
cgcctcgccgccgaggtgtaccgcgccgcccgcgacgggcgcaccctctttgccgaggcc
ccgaccggtaccggtaaaaccctcgccaccctgttccccgcgatcaaggccgtcgccgag
ggacacgtggaaaaggtcttctttctcaccgccaagaacaccggtcgcgaggccgcccag
cgggcccatcggatcctgaccgacagcggcctacggtacaaggcgctgaccctcacggcc
aaagacgcgatctgcttccacgaaaacggcccctgccgcatcgaacaatgcgagtacacc
cgcggctattacgatcgcgtgcgcgatgcgctgaccgacctgttcgcttcggacgcactc
catcgcgaagcgatcgtggacgtggcccgccgccaccgcgtctgcccgttcgagctctcg
ctggacatggcggtttgggccgatctggtcatttgcgactacaactacgccttcgaccca
ggcgtctacctgcgccgattttttggcgaagataaatcgacccacatgctgctgatcgac
gaggcacacaacctgatcgatcgcgcccgcggcatgttcacggccgagctgtccaaacgc
gaagtcttggaagtgcggcgcacctggtcgaaacgggccccgatggtccggcgcgcgctg
aatggggtgaaccggcaattgctgaagatggggcgcgagatggacgccgccgggctgaag
gaacaaacgcttaccgaggcgcccaaggcgttgatccccccgttgcagaagctcgtcgcc
gcctacagtcagtggctgaccgaggcggagccgggcctgttcggcgaagaaccacccgaa
ttgttccgtaccgtacggcagtttcttcgctgcgcggagcactatggcgatcacttcgcc
accatctaccggcgacgcggcaaggacctcgcggtcaaggtctactgcaaggatccggcg
ccgcagttgaaggcgaggttggccaaagtccgcgcggcaacctacttcagtgcgaccctg
acccccttcggctatcaccgcgccctgctcgccgcgaaagagcgggatccgcaattgcgg
ctgccctcgccattcgatcccaaccatctgtgcctgttggtggcggacgggatttcggta
cgcttccgcgaccgcgagcgcacgctgggcgacgtggtctcgatgatccgagcagtcact
cattccaggtctggcaactatttaatttttcttccttcctatcgctatttaaatttgatt
accgaaaatttcgctcagaagcatgacgacgtcgagattctgatccaggaacccgggatg
gacgaagcgcaacggatcgctttcttgaaagagttcgaagaacgcgacgcgtcgacgctg
gtcgggttcgcggtgatgggcggcattttcggagagggcatcgacttgcgcggcgaacgt
ctcatcggggtgatcgtggtcggcgtggggctgccccagatctgcatcgaacggaacctg
atccgcgagcatttcgaagagaacgggttcgatttcgcctatcgggtgccaggcatgcaa
cgggtcctccagaccgcaggccgggtgattcggaccgagcgagatcggggggtcgtctgt
ttgatcgacagccgcttcagcgaacccgattacgcgcggctgtttcccgcccactggcgc
ccggaacgggtgagacacgccgcccaagtcaccgaacggctcgcccggttttggtcggcc
gaggcggacccggacgagcaaccatcctga
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