Sulfidibacter corallicola: J3U87_28645
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Entry
J3U87_28645 CDS
T07864
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scor
Sulfidibacter corallicola
Pathway
scor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J3U87_28645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scor03019
]
J3U87_28645
03009 Ribosome biogenesis [BR:
scor03009
]
J3U87_28645
Enzymes [BR:
scor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J3U87_28645
Messenger RNA biogenesis [BR:
scor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J3U87_28645
Ribosome biogenesis [BR:
scor03009
]
Prokaryotic type
rRNA helicases
J3U87_28645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QTD49575
UniProt:
A0A8A4TSQ1
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All DBs
Position
complement(9480034..9481797)
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AA seq
587 aa
AA seq
DB search
MNEQEEQTPSFADLGLSESLLAALDAVGYESPSPIQARMIPHVMEGRDVVGQAQTGTGKT
AAFALPLLSRLDLSLKSPQALVLTPTRELAIQVAEAFHRYAHHLKGFHVLPIYGGQAYEG
QLRHLKRGVHVVVGTPGRVMDHMRRGTLDVSGLSSLVLDEADEMLRMGFIDDVEWVLDQT
PPERQIALFSATMPREVRRIAERHLTDPVEVTIEVRTTTAETIRQRFWMVSGLHKLDALT
RILEVEEFDGMMIFVRTKTATLEVAEKLQARGFAAAALNGDLAQKDRERRVERLKSGKLD
ILVATDVAARGLDVERISHVVNYDIPYDTEAYVHRIGRTGRAGRSGEAILFVSPRERHLL
RAIERATRQRIDRMSMPSTDVVNDKRVTRFKEQINETLGLDGLTQMRDIVSSYVEEKNIP
ALDVAAALAIMVHGDRPLLLDPEPVFERPPRDFRDDRPQRRDRNRRTRPPDAGMARFRIE
VGHVHGVKPGQIVGAIANEVGLDSKHIGYIDIFNEFSTVDLPEATPRDVLRHLKKVRVAG
QAMRISRQEAGDGRPHRGRGFKHGGHRDKTGRPPDRKVKKFKGNKKP
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacaagaagaacaaaccccgagttttgcggacctggggctgagtgaatcgctg
cttgcggccttggatgccgtgggctacgaatcgccttcgccgattcaggcgcgcatgatt
ccacatgtcatggaaggtagggacgtggttggccaggcccagaccgggaccggcaagacg
gcggcgttcgccttgcctctgctgtctcggttggatttgagcctcaaatccccacaggca
ctggtcttgacgccgacgcgtgaactggccatccaggtggccgaggcgtttcaccgctac
gcacatcatctgaagggctttcacgtcttgccgatttacggcgggcaggcctacgagggg
cagctacggcacctgaaacgcggcgttcacgtcgtggtcggcacccccggccgggtcatg
gatcacatgcggcgcgggaccttggacgtgtcgggcctgtccagtctggtattggacgaa
gccgacgaaatgttacgcatgggcttcatcgacgacgtcgaatgggttttggatcaaacc
ccacccgagcgccagatcgccctgttctcggcgaccatgccgcgcgaggttcgccgtatc
gctgaacggcacctgaccgatccggtggaagtgaccatcgaggtccgtaccaccaccgcc
gaaaccatccgccaacggttctggatggtgagcggcctccacaagttggatgccctgacc
cgcattctcgaggtggaagaattcgacggcatgatgattttcgtgcgcaccaaaaccgcc
actctggaagtggcggaaaagctccaggcacgcgggttcgccgccgccgcgctcaacggt
gatctggcccagaaggatcgcgaacgccgcgttgaacggctgaaatccggcaaactggat
attttggtggccaccgacgtggccgcgcgcggcttggacgtggagcgcatcagccacgtc
gtcaactacgacattccttatgataccgaagcctatgtgcaccgcatcggccgaaccggc
cgcgccggccgcagtggcgaggcgatcctcttcgtgtccccgcgcgaacgccacctgctg
cgcgccatcgagcgcgccacccgccagcgcatcgatcggatgtcgatgccctccacggac
gtggtcaacgacaagcgggtcacgcggttcaaggaacagatcaacgagaccctggggctc
gacggactgacccaaatgcgcgacatcgtcagcagctacgtggaggagaaaaacatcccc
gcgctggatgtggctgcggcgctggcgatcatggtccacggcgatcggccgcttctgttg
gaccccgagccggttttcgaaagaccaccgcgcgatttccgcgacgatcggccgcagcgt
cgcgatcgaaaccgccgcacccgtccgcccgatgcgggcatggcgcgcttccgaatcgaa
gtcggccacgtacacggcgtcaagcccggccagatcgtcggtgccatcgccaacgaagtc
gggttggacagcaagcacatcggatacatcgacatcttcaacgaattcagtacggtggac
ctgccggaggccaccccgcgcgatgtcctgcgccatttgaagaaagtgcgcgtggccggt
caggcgatgcgcatcagccgccaggaggcgggcgatggaagaccgcaccggggcagagga
ttcaaacacggtgggcatcgcgacaagacgggtcgcccacccgatcgcaaagtcaagaaa
ttcaaaggtaacaagaaaccatga
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