Salinivibrio costicola: HBA18_00615
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Entry
HBA18_00615 CDS
T06511
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
scot
Salinivibrio costicola
Pathway
scot02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HBA18_00615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scot03021
]
HBA18_00615
Transcription machinery [BR:
scot03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HBA18_00615
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
PhyR_sigma-like
HTH_23
HTH_SB
HTH_68
PCI
DUF2774
TnsD
HTH_31
GerE
HTH_Tnp_ISL3
HTH_7
HTH_24
HTH_11
HTH_3
HTH_40
Phage_terminase
HTH_28
HTH_38
RMI1_N_N
Motif
Other DBs
NCBI-ProteinID:
QIR05010
UniProt:
A0ABX6K486
LinkDB
All DBs
Position
1:123894..124403
Genome browser
AA seq
169 aa
AA seq
DB search
MIGSQQALHQGVTSLYVSHQRWLSGFIQRRMGCPSTSADLVQDTYLRLLNSGRLPDTDSA
RAYLTHIAKGLIVDWYRRRRVEQAYLDYLQAQPERMASSPEQHQQTMEALVAVDALLGHL
PVKVRQALLMRQLEGMSYKDIAKALSVSISSVEKYVAKALATCVLAAQE
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgatagggagtcagcaggcgttacatcagggtgttacctcgctgtatgtgtcacatcag
cgctggctttcgggctttattcagcgacgcatgggatgcccgtcaacgtcggcagactta
gtgcaagatacctatttgcgtttgcttaactctggccgtttgcctgatacagacagtgcg
cgtgcttaccttactcatatcgccaaaggcttgatcgtcgattggtatcgccgtcgtcgc
gttgagcaagcttacttagactatctgcaagcgcagccggaacgcatggccagctcgccc
gagcaacaccaacaaaccatggaagccttggtggcggttgatgcgttattaggacattta
ccggtcaaggtgcggcaggctttgctgatgcgccagctagagggaatgagctataaagac
atcgcaaaggcgctttctgtctcgatttcctcggtagagaagtatgtcgccaaggcactg
gcgacctgtgtactcgccgcacaagagtga
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