Salinivibrio costicola: HBA18_02525
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Entry
HBA18_02525 CDS
T06511
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
scot
Salinivibrio costicola
Pathway
scot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBA18_02525 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scot03019
]
HBA18_02525 (pcnB)
Enzymes [BR:
scot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
HBA18_02525 (pcnB)
Messenger RNA biogenesis [BR:
scot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HBA18_02525 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
QIR07286
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All DBs
Position
1:509794..511188
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AA seq
464 aa
AA seq
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MFNRVTSFCRKVLNRDNKSRAIEDLKLEVIPRKAHGISRKGISENALKVLYRLHKAGYEA
YLVGGGVRDLLLGRDPKDFDIATNATPDEVRKLFRNCRLVGRRFRLAHILFGRDVIEVAT
FRGHHTDPKKSKHTARSEDGMLLRDNVYGSIDEDAQRRDFTVNALYYNIADFSIRDYAGG
VDDLNNRIIRLIGDPETRYREDPVRMLRAVRFAVKLDMTINPATAAPIETLAPLLQEIPS
ARMFEESLKLLQAGQGLATYKMLREYHLFEQLFPAVAAHFTEEHTSQTEQMLEQVLSSTD
KRIANSQRINPAFLFAAMLWYPVVTRAEEMTFESGLSYYDAFMVAANDILDEQVKTVAIP
RRFTAMVREIWQLQMRMTRRTGARAFKLLDESKFRAAFDLLEMRGAVEGGDTEVLGAWWR
DFQRADQGGRQKMVRAINKVSNTRKPRRRKQAPRRRKPQSNSSS
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atctttaatcgagtgaccagcttttgccgtaaggttctgaatcgtgataataaatcacga
gcaatagaggatcttaagttggaagttatcccccgcaaagcacatggcatttcgcgaaaa
ggtatcagcgaaaatgcgctgaaagtgctctatcgcctgcataaagcgggctatgaggcg
tacctcgtcggtggcggtgtgcgtgatttactcttggggcgtgaccccaaagactttgat
atcgccaccaatgccacgccagatgaagtgcgtaagttattccgaaactgccgccttgtc
ggacggcgatttcgtcttgcccatattctgttcggccgtgatgtgattgaagtggcgacc
ttccgaggtcatcacactgatccaaagaaaagtaagcacacggcgcgttcagaagacggc
atgctgctaagagacaatgtctatggcagcattgatgaagatgcacaacgtcgcgatttc
accgttaacgcgctgtattacaacatcgctgatttttcgattcgagattacgccggtggt
gtggacgacctgaacaaccgcattattcgtttgattggtgatcctgaaacgcgctatcgc
gaagatccggtgcggatgttgcgtgcggtacgctttgccgtcaaactcgacatgaccatc
aatccggccacggccgcaccgattgaaaccttggccccgttgctacaagaaatcccgtcg
gctcgcatgtttgaagaaagtctgaaactgctgcaagcaggtcaaggcttggcaacctat
aaaatgttgcgagagtatcatctcttcgaacagcttttccctgcggttgcggcgcacttt
accgaagagcacaccagtcaaaccgaacaaatgcttgagcaggtcttaagctccacggat
aaacggatcgccaacagtcaacggattaatccggcctttttgtttgcggccatgctttgg
tatcccgtggtaacacgtgctgaggagatgacgttcgaaagtggcttgagttattacgat
gcctttatggtggccgctaacgacatcctggacgagcaagtgaaaacggtggcaattcca
cgccgtttcacggcaatggtacgagaaatctggcaattgcaaatgcgcatgacgcgtcgc
acaggggctcgcgccttcaaattgctcgacgaatccaaattccgagcggcgtttgatttg
ctagaaatgcgtggtgcggttgaaggtggagataccgaggtgctaggtgcatggtggcgt
gatttccaacgtgccgaccaaggtggccgacagaaaatggtccgcgccattaataaagtg
agtaatacacgtaaacctcgccgtcgtaagcaagcgccacgacgacgtaaaccacaatcg
aattcatcttcatga
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