Salinivibrio costicola: HBA18_02945
Help
Entry
HBA18_02945 CDS
T06511
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
scot
Salinivibrio costicola
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
scot03009
]
HBA18_02945 (rlmD)
Enzymes [BR:
scot01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HBA18_02945 (rlmD)
Ribosome biogenesis [BR:
scot03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HBA18_02945 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
MTS
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_15
Methyltransf_11
Cons_hypoth95
Methyltransf_4
Methyltransf_23
PrmA
DOT1
UPF0020
Methyltr_RsmB-F
CMAS
Ubie_methyltran
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
QIR05427
LinkDB
All DBs
Position
1:595314..596630
Genome browser
AA seq
438 aa
AA seq
DB search
MARFFKPQKKKNVEQKHQLLAIQRLDHHGDGVGYWQKKPVFVPGTLPGEQALVQLTEQKR
QYARAKLIKLDQRAETRIEPACPLYQQCGGCSLQHLSHSGQVAHKRAVLTELIEKFAGDE
TVELSDGAIDSPWQYRRRARISLKVDNKGALTMGFRARQSNAIVDVGHCPVLSEPLNQLL
ASLRPCLDGLRGRRILGHVDLIEADNGCIASLRTTKALHPEDRQALQAWAELTGCMLYWQ
QADGPLERVVGEPPYYESQQTRLYFQPGDFIQVNAAVNQKMVAQALNWLELASTDVVLDL
FCGLGNFSIPMAKQAKTVIGVEGVEAMVSQAQDNAKANQVSNAQFYQADLNGETLNGDWT
RHAFDKILLDPARAGAAGVMDFVAQSSATHIVYVSCNPATLARDSRVLLAQGYQLTRLSM
LDMFPQTGHLESMALFRR
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcttttttaagcctcagaagaaaaaaaacgttgaacaaaagcatcagctgctc
gctattcaacgcctcgaccaccacggtgatggggtcggctattggcagaaaaaacctgtc
tttgttccgggtactttgcccggtgaacaggcgctggtgcagctcaccgagcaaaagcgc
cagtatgcgcgggccaaactgattaaactcgaccagcgcgcggaaactcgcattgagccg
gcttgtcctttgtatcagcaatgtggcggctgtagtttgcagcatttaagccactcaggc
caagtagcacacaagcgcgcagtgctgacagaattgattgaaaaatttgccggagacgag
acggtcgagctgtcagatggcgccatcgatagcccttggcagtatcgtcgtcgcgcgcgc
atcagcttgaaagtcgataataaaggggcgctgaccatggggtttcgagcccgtcaaagc
aatgccattgtcgatgtgggccactgtcctgttctcagtgaaccattaaatcagctgctt
gctagcttacggccttgtttagatgggctgcgaggacgccgaatcctcggccatgttgat
ttgattgaggcagacaatggctgtattgcgtcgttgcgcaccaccaaggcgttgcaccca
gaagataggcaagcgcttcaagcatgggcagagctgacaggctgcatgttgtattggcag
caagctgacgggccgcttgagcgagtggtgggcgagcccccgtattacgagagccaacaa
acccgcctctattttcagcctggcgactttattcaagtcaacgcggcggtgaaccaaaag
atggttgcccaagctctgaattggctagagcttgcgtcaaccgatgtggtgttggatctg
ttttgtggtcttggcaatttcagcatccccatggcaaaacaggcgaaaaccgtgattggt
gtagaaggggttgaggcgatggtgtcgcaagctcaggataatgcgaaggccaaccaagta
agcaatgcgcagttttaccaagcagatctcaatggtgagacgctgaatggggactggaca
cggcacgcatttgataaaatcctgctcgatcctgcccgagcaggggctgccggagtgatg
gactttgtggcacaatctagcgctacacacattgtttatgtgtcctgcaacccagcaacg
ctggcgcgggatagtcgcgtgttgttggcgcagggttaccaactaactcgcttgagtatg
cttgatatgtttccgcaaacagggcatttggaatccatggcactgtttcgacgctag
DBGET
integrated database retrieval system
