Salinivibrio costicola: HBA18_03220
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Entry
HBA18_03220 CDS
T06511
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
scot
Salinivibrio costicola
Pathway
scot03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HBA18_03220 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scot03400
]
HBA18_03220 (recC)
Enzymes [BR:
scot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HBA18_03220 (recC)
DNA repair and recombination proteins [BR:
scot03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HBA18_03220 (recC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
QIR05474
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All DBs
Position
1:652116..655496
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AA seq
1126 aa
AA seq
DB search
MFTVYHSNQLDLLKSLLVSLIQQRPLSDPFQKELILVQSPGMAQWLKMALANEQQIVANV
EFPLPATFIWQLFVRVLDGVPERSDFNKEAMTWKLMDILPSCLDAPEFADLAAYLEDSQD
QQRAYQLAEKVADIFDQYLVYRPEWVLAWEQEQPVPELDDVQTWQQKLWRRLYDHTLALG
QSPYHRANLYQEFIDTLTSHQHKPEGLADIERVFVFGISALPPRYLDALQALGEHVEVHF
MFTNPCRYYWGDIRDKRYLAKRAALARDKVSRIEDIPAESQLALGLDEPEHGEVGNSLLA
SMGKLGRDNLLLLSEMACNEIDSGFVEVTRDNLLHHIQADILDLNEPGDPKQTETSAAKT
EIEPDDVSIAIHACHSPMREVEVLHDQLLAMFEANPSLSPRDVIVMVADINAYSPAIQAV
FGNAPSERFIPFSISDRSADQESPVLAAFLRLLTLPDSRCSAAELLEILEVPAVSRRFAI
DSQQFDQIKQWVEETGIRWGLDTHTASQFALPEQYQNTWLFGLKRMLLGYAMPSEAGLFA
DTVPYDEVQGLNAELAGRLGLFIDTLIYYQQQLAIECDGKAWVARLTQMLDDCFAIEGDE
ELAVKLIRTQLDSWLTQLSDAAFTHTLTLPVVRDYFNGRLNNERVSQRFLAGQVNFCTLM
PMRSIPFDVVCLLGMNDGVYPRTVPSVGFDLMVGRTRAGDRSRRDDDRYLFLEALQSAQQ
RLYISYVGRSVQDNSLKVPSVLVTELLEYCTQGYCLAGDRDLPEAQSRQQLEEKLIQFHP
LTPFSPDAFSGAGSYAQEWLPAAKGQGTQLPAFIGDALNPDPDSHQDPVIELAELQRFWR
LPVRYFFQRRLKVFFEQLEAPLEEFEPFSLDTLHRFQLRDQLLAHFIETDDSPQSVQDFM
ARQRGQGKLPLAYFGELTLDTQVTVIRDMYQRLTPLLAAPRPDLELNLTLPTALGEVQLQ
GWLNRRYQDSLVRFHCGDLTVRHQLAVWIDHLCQCAMGEAVPSTLVGVKETIEFSPLSKD
DALAHLQALVEDYQHGLNQPLTYLPSSVGAGIKARDGKKGFDNSETGQDKALKAIRDTFV
GGFNPGEGQDPYIYRVWPQWRESLGQALLATGDRHLMPMLAQRQKR
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
gtgtttactgtttatcactctaatcagctcgatctgttgaaatccttgttggtctccctg
atccaacagcgaccgctgtctgacccttttcaaaaagaacttattctggtgcaaagcccc
ggcatggcgcagtggttaaaaatggcactcgccaatgagcagcagattgtcgctaacgtc
gaattcccgcttcccgctacctttatctggcagctgtttgtgcgggtgttggatggcgtg
cctgagcgcagtgatttcaataaagaggcgatgacatggaagctgatggatatcttaccc
agctgtctggatgcgccagagttcgctgatttagccgcgtatttggaagacagccaggat
cagcagcgtgcttaccagctggccgaaaaagtggccgatattttcgaccagtatttggtc
tatcgccccgagtgggtgctggcatgggagcaagaacaaccggtgcctgagcttgacgat
gtgcagacttggcagcaaaaactgtggcgccgcttatacgatcacaccttggcgttgggt
caatcgccttatcatcgcgccaacctgtatcaagagtttatcgataccttaaccagtcat
cagcacaaacctgagggactggctgatattgagcgggtctttgtgtttggcatctccgcg
ctcccaccacgctatctggatgcgttgcaagcactgggcgagcatgtggaggtgcatttt
atgttcaccaatccatgccgttattattggggcgatattcgcgacaagcgctatctggct
aaacgtgccgcattggcgcgggataaggtcagccgaattgaagacatccccgcagagagc
caattggcactggggcttgatgagcctgagcacggtgaagtaggaaacagcttgctggcg
tcgatgggaaaactggggcgcgataacttactgctgctctcggaaatggcctgtaatgag
attgatagcggctttgttgaggtcactcgcgataatcttctgcatcacatccaagccgat
attttggatttgaatgagccgggcgatcccaagcagactgaaaccagtgcggcgaaaaca
gaaatcgagccagatgatgtttcgattgcaattcatgcctgtcacagcccgatgcgcgaa
gtcgaagtgctgcacgatcagctactggcgatgtttgaggccaacccatcactgagcccc
cgcgatgtgattgtgatggtggcggatatcaatgcctacagccccgccattcaagcggtg
tttggtaatgcaccgagtgagcgttttattccgttttccatctcagatcgcagcgctgat
caagaaagcccggtgttagccgcctttttgcgtctgctcaccctgcctgatagtcgatgc
agtgcagcggagctattggaaattcttgaggtgccggcggtgtcgcgccgttttgccatc
gacagccaacagtttgatcagattaagcagtgggtggaagaaaccggtattcgctggggg
cttgatacccataccgcaagccaatttgccttgcccgagcagtatcagaatacgtggcta
tttggcctgaaacgtatgttactcggctacgcgatgccgagtgaggccggcttgtttgca
gacaccgtcccttatgatgaagtccaaggacttaatgcggagctggctgggcgtttagga
ttgtttatcgacaccttaatttactaccagcagcagttggcgattgaatgcgatggcaag
gcatgggtggcgcgattgacccaaatgctggatgactgcttcgccattgaaggcgatgaa
gagttagcggtcaaattgatccgtactcagttagacagttggctaacgcagcttagcgat
gccgcctttacccatacgctaaccttgcccgtggtgcgcgattactttaatggtcgcctc
aataacgagcgagtcagccagcgctttttggccggccaggtcaacttttgtaccttgatg
ccgatgcgctccattccctttgatgtggtgtgtctgcttgggatgaatgatggcgtgtac
ccgcgcacagtgcccagtgtcggctttgatttgatggttggccgcacgcgggcgggagat
cgctcgcgccgcgacgatgatcgttacctgtttttagaagcgttgcagtcagcacagcag
cgtttgtatatcagttatgtcggtcgctcagtgcaagacaacagcttaaaagtcccatcg
gtactggtcaccgagttgcttgagtattgcacccaaggctactgtttggccggtgaccgc
gacttacccgaagcgcagtcacgccagcagttggaagaaaaacttatccagttccatccg
ctaacgccctttagccctgatgccttttccggtgctggaagttatgcacaagagtggcta
ccagctgctaaaggacaagggacgcaactgccggcatttattggcgatgcgttaaaccct
gatccggacagccaccaggatcccgtgattgagttggctgaattgcagcgcttttggcgg
ttgcccgtgcgctattttttccaacgccgcttgaaagtcttctttgagcagttagaggcg
ccgttagaagaatttgaaccctttagtttagataccttgcaccggtttcagctacgcgat
cagctgttagcgcactttattgaaaccgatgacagtccccaaagtgttcaggattttatg
gctcgacagcgtgggcagggcaagttgcctttggcgtactttggcgaactgaccttggat
acgcaagtcacggtgatccgtgatatgtaccaacgtttaacgcctttactcgccgcgccg
cgccccgatcttgagcttaatctgacccttcccactgcgttgggtgaggtgcaattgcaa
ggttggctcaatcggcgttatcaagacagcttggtccgctttcattgcggtgatctgacc
gtgcgtcatcagcttgcggtatggatcgatcatttatgccaatgcgcgatgggcgaagcc
gtgccgagtacattggtgggggtgaaagaaaccatcgagttttccccactcagcaaagat
gacgcgcttgcacacttacaagctttggttgaagactatcaacatggcctcaaccagccg
cttacttatctgccaagctcagtcggagcggggataaaagcccgagatggcaaaaaaggc
tttgataacagtgaaaccggccaagacaaagccctaaaagcgatacgcgatacgtttgtg
gggggctttaatcctggcgaagggcaagatccttacatctaccgtgtttggccgcaatgg
cgagagagcctcggccaggcgctgttagctacaggcgatcgccacttaatgccgatgcta
gcgcagcgacaaaaacgttag
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