Salinivibrio costicola: HBA18_05060
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Entry
HBA18_05060 CDS
T06511
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
scot
Salinivibrio costicola
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scot03016
]
HBA18_05060 (rnd)
Enzymes [BR:
scot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HBA18_05060 (rnd)
Transfer RNA biogenesis [BR:
scot03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HBA18_05060 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
LIS_MGM1
DUF6819
Motif
Other DBs
NCBI-ProteinID:
QIR05793
LinkDB
All DBs
Position
1:1040058..1041194
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AA seq
378 aa
AA seq
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MNYQLITSHQQLVDVCAKMRQKPAVMVDTEFVRTRTFYAQLGLVQLYDGEQLVLIDPIEI
EDLSPLWALLADTNVTKVLHASSEDLDVFQHYAGTLPTPMVDTQLMAAFLGHGVSEGFAS
LVNTYVGVALDKGESRTDWCARPLTDKQKHYAAADVYYLMPLYQALEKALAKTQWQAALQ
EECTRLCDKKRQPKEDSLAYLDIKYAWQLQPNQLAVLQSLAKWRAKEARRRDIALNFIVK
ELHLWKMARFGIRSVEQMQAHDFDKFEIRYHAQTLITLAKQAEKLPKAKWPQPITRLVDE
PGYKAVIKTLKESVQQCADELGFVPEFIGSKKQLNQLISWVWREHKAEDKRPDLAQGWRY
TLIGKRLIEMIPSAPVTH
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
gtgaattatcaactaatcacatcacatcaacaacttgtcgacgtatgcgcaaaaatgcgc
cagaaacctgctgtgatggtcgataccgaatttgtgcgtacccgtacgttttacgcgcaa
cttgggttggtgcaattgtatgatggtgagcaacttgtactcatcgatccgattgaaatc
gaagatctttccccattgtgggcattgctggctgacaccaatgtcaccaaagtattgcat
gccagtagtgaagacttggatgtgttccaacactatgccggtaccttacccacccctatg
gttgatacccagctgatggctgcttttttagggcacggtgtatcagaagggtttgcgagt
ttggtgaatacctatgtgggagtggcgcttgataaaggcgaatcacgcactgattggtgc
gcgcgcccactaaccgataagcaaaagcattatgcggcggcggatgtgtattatctgatg
cctctgtaccaagcgcttgagaaagccttggcaaaaacacagtggcaagcggcgttgcaa
gaagaatgtacccgcttatgtgacaaaaagcgccaacccaaagaggattcgctggcatat
cttgatattaaatatgcgtggcagctgcagccgaatcaattggcggtactccaatcgctt
gcaaagtggcgcgcgaaagaggcacgacgtcgcgatattgcgcttaatttcattgtgaaa
gagcttcacctttggaaaatggcgcgatttggaattcgtagcgttgagcaaatgcaagcg
catgattttgataaatttgagattcgctatcatgcccaaaccttgatcacgctggcgaag
caagctgagaagcttcctaaagcgaagtggccacaacccattacgcgtttagtcgatgag
ccgggttacaaagccgtgattaagacgctcaaagaaagcgttcaacagtgtgcggatgag
ctgggttttgtaccggagtttattggctcaaagaagcaattgaatcagttgatcagttgg
gtatggcgagagcataaagcggaggataaacgcccagatctcgctcaagggtggcgatat
actctgattggcaagcgcctgatagagatgattcctagtgcgccagtgacgcattaa
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