Salinivibrio costicola: HBA18_06795
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Entry
HBA18_06795 CDS
T06511
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
scot
Salinivibrio costicola
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scot03019
]
HBA18_06795 (hrpA)
Enzymes [BR:
scot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HBA18_06795 (hrpA)
Messenger RNA biogenesis [BR:
scot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HBA18_06795 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
SLFN-g3_helicase
ABC_tran
T2SSE
ResIII
NACHT
NTPase_1
TsaE
PhoH
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QIR06102
LinkDB
All DBs
Position
1:1409503..1413396
Genome browser
AA seq
1297 aa
AA seq
DB search
MSSRHHNTSETLFAALNDCMLQDRFRFKKRIHGAQKIKKDDAKQAVYDQIAAEMAQSMQR
LLARRANTPTVRYPEELPVSQKKDDIAEAIANNQVVIIAGETGSGKTTQLPKICMELGLG
VAGTIGHTQPRRLAARSVASRIAEELDVELGSSVGYKVRFNDKVSEATQVKLMTDGILLA
EIQHDRYLNQYDCIIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPERFSKH
FNNAPMIEVSGRTYPVEVRYRPLVEENDSDRDQLEAISDAVDELCLEGPGDILIFMNGER
EIRDTADYLQRRQLRDTEILPLYARLSAGEQNRVFQSHSGRRIVLATNVAETSLTVPGIK
YVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICVRLYSEEDFLGRP
EFTDPEILRTNLASVILQMTALGLGDIQAFPFVQPPDSRHIKDGVRLLEELGAIKPGQAT
DKRKLTAIGKTLAKLPIDPRLARMVIEAPKHGALNEVMVIAAALAIQDPRERPADKQQQA
DEKHRRFADKESDFLAYVNLWDYVKEQQKALSNNQFRKQCKKDYLNYLRVREWQDVHYQI
TQVMKEQNAQFNQEPASYQAVHMALLAGLLSHIGLKDQEKNEYQGARNARFHIFPGSGLF
KKQPKWVMVAELVETSKLWGRIVARIQPEWVEPLAQHLIKRSYSEPHWSRKQAAVMASEK
VTLYGIPIVASRKVNYGPIDPVLSRELFIRSALVEGDWQTKHAFFRQNQKLLAEVEELEL
KSRRRDILADDDTLFDFYDQRLDHSVVSGRHFDTWWKKARQDNPDLLNFEKAMLLQGDAS
HVTELDYPNFWYQDNLKLKLSYQFEPGQDHDGVTVHIPLPILNQVSEEGFDWHVPGLRHE
LIVALIKSLPKPLRRNFVPAPNYADAVLQRVTPMEAPLLDSMEKALKQMSGVTIERDSWN
LAQLPEHLRIQFRVVDDKNRTLAESEDLHALKLSLKDKVQATLSDVADDDIEQQGLTQWT
FGELPKRYQQKRSGFEVKAYPALVDEKDSVAIRLFETEDQQHKAMQAGQRRLVLLNVPSP
IKYLHTHLPNKSKLGLYFNPYGRVLDLIDDCIACGVDKLIEQHGGLTWEAQAFEALKETV
RAELGDTVVDIAQQVEQILTHAFSINKKLKGKVDLSMAFAMSDIKAQLEGLIYKGFATES
GWQRLPDILRYMKAIERRLEKLPIDPARDRSHMLKIESVMNDYKALLNKLPKGKNLPDEV
KAIRWMIEELRVSYFAQQLGTPYPISDKRIKNAIAAI
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
ttgagttcacgtcatcacaacacgtcagagacactgtttgcagcgttaaacgattgtatg
ctgcaagaccgttttcgttttaaaaagcgcatccatggcgcacaaaaaatcaaaaaagac
gacgccaaacaggcggtgtacgatcaaattgccgctgaaatggcgcagagtatgcagcgt
ctgctcgcccgtcgtgccaatacgccaaccgttcgctatccggaagaattgccagtcagt
cagaagaaagatgacattgccgaagcgatcgcgaacaaccaagtcgtaatcattgcgggg
gaaacgggctcaggcaaaaccactcagctgcccaaaatctgtatggagcttgggctaggc
gtcgccggtaccataggtcacactcagccacgtcgcttggctgcacgctcggtcgcctca
cggattgctgaagagcttgacgtcgagttaggcagtagcgtcggctataaagtacgtttt
aatgacaaagtctcagaggcgacgcaagtcaaactgatgacggacgggatcttgttggcc
gaaatccagcacgatcggtatctgaatcagtacgattgcatcattatcgatgaagcccac
gagcgcagcctaaatatcgactttattctcggctatttgcgcgagttattgcccaagcgt
cccgatctcaaagtcatcattacctcggcaaccatcgatcctgaacgtttttctaagcac
ttcaataacgcgcctatgatagaggtgtctggccgtacttatccggtggaagtgcgctac
cgtccattagtagaagagaacgatagcgatcgtgaccagctggaagcgatcagcgatgcg
gtcgatgagctgtgcctagaagggccgggtgatatcctaatctttatgaacggtgagcga
gagatccgcgacaccgccgattaccttcagcgtcgtcaactgcgcgataccgagatttta
cccttgtacgcaaggctttctgctggcgagcaaaatcgtgtattccaatctcactcgggg
cgccggattgtactggccaccaacgtcgccgagacctcgctaaccgtcccgggcattaag
tatgtaattgatcctggcacggcgcgtatttctcgctatagctaccggaccaaggtgcag
cgactgccgattgagccgatttcacaggctagtgctaatcagcgtaaaggacgctgtggc
cgtgtgtcggaaggcatttgtgtgcgtctgtatagcgaagaggactttttaggccgtcct
gaatttaccgacccagaaattctgagaacaaatctggcttcggtgatcttacaaatgacg
gcattagggctcggtgatattcaagctttcccatttgttcagccgcctgacagccgtcac
atcaaagatggtgttcgtttgctcgaagagctgggggcgatcaagcccggccaagccact
gataaacgtaagctgaccgcgattggtaaaaccttagccaaactgccgattgacccgcgt
ttggcacgcatggtgattgaggcgcccaagcatggtgccttaaatgaggtgatggtgatt
gccgcggccttagctatccaagacccacgtgagcgtccagcggataagcagcaacaagcg
gatgaaaagcaccgtcgttttgccgataaagaatcggactttttggcctatgtaaacctt
tgggattacgtcaaagagcagcaaaaagcgctatcgaataaccagttccgtaaacagtgc
aaaaaagactacctcaattacttgcgggtgcgagagtggcaagacgttcactatcagatc
acccaagtgatgaaagagcagaatgcgcaattcaaccaagagcctgccagttatcaggcc
gttcacatggcactgttagctgggctattaagccatattggcctgaaagaccaagaaaag
aacgaataccaaggcgcgcgaaatgcacggttccatattttcccgggctctgggcttttc
aaaaagcagcctaaatgggtgatggttgccgaactggttgaaacctcgaaactctggggg
cgaattgttgcgcgaatccaacctgaatgggtggagccattggcgcagcatttgattaag
cgcagctacagtgaaccacattggtcacgcaaacaagcggctgtaatggccagcgagaag
gtcacgctatacgggatcccgattgtcgccagccgtaaagtcaattatggccccatcgac
ccggtacttagccgtgagctgtttattcgttcggcattggttgagggagattggcaaact
aagcatgcctttttccgccaaaaccaaaagctgttggcggaagtggaggagctcgagctc
aaatctcgccggcgcgatattttggcagacgatgataccttgttcgacttttacgatcag
cgcctcgatcacagtgtggtcagtgggcgtcacttcgatacctggtggaaaaaggcacgt
caagacaatccggatctgctcaactttgaaaaagccatgctattgcaaggcgacgcgagc
catgtcacggagctggattaccctaacttttggtatcaggacaacctaaaactcaaatta
agctaccaattcgagccgggccaagaccatgatggggtgacggtgcatatcccactgccg
atccttaatcaggtgtcagaagaaggctttgattggcacgtccccgggctacgtcacgag
ctaattgtcgcgctgattaaatctttgcctaagccgttacgacgtaactttgttccggca
ccaaactatgcggatgcggtcttacaacgagtgacgcccatggaagcgcctttgctcgat
agcatggaaaaagccctaaagcagatgtccggtgtcaccattgagcgcgacagctggaat
ttggcgcaattgccagagcatctgcgcattcagttccgcgttgtggatgataagaatcgc
accttggctgaaagcgaagatcttcatgcactgaaactgtcactgaaagataaggtgcaa
gcgacgttatcggatgtggcagatgatgacattgaacagcaaggactcacccaatggaca
tttggggagttgccgaaacgctaccagcaaaagcgcagcgggtttgaagtcaaagcgtat
ccggctttagtcgatgaaaaagacagtgtcgcgatccgccttttcgaaacggaagatcaa
caacataaagccatgcaagcggggcagcgtcgattggtcttgctcaatgtgccatcgccg
ataaaatacctgcacacccatttgcccaacaagtcgaaactcggtctgtattttaaccct
tatggccgtgttttggatttgattgatgactgcatcgcctgtggcgtggataaactcatt
gagcaacacggcgggttaacctgggaagcgcaagcattcgaagctcttaaagagacggtg
cgtgcggagctaggtgataccgtggtggatattgctcaacaggtcgaacagattttaacc
catgcctttagcatcaataaaaagctaaaaggtaaagtggatctttcgatggcgtttgcg
atgtcggatatcaaagctcaactagaagggctgatttacaagggctttgctaccgaatca
ggctggcagcggctgcccgatattttacgctatatgaaagcgatagagcgtcggttagag
aagctgcccattgatccagcgcgagatcgcagtcatatgctcaagattgaatctgtgatg
aatgactataaggcgttgctgaataagttaccgaaaggcaaaaacctccctgatgaggta
aaagccatacgctggatgattgaagagcttcgagtgagttacttcgcgcagcaactgggt
acgccttatccgatttcagacaagcggattaaaaacgccattgcggcgatttaa
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