Salinivibrio costicola: HBA18_07425
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Entry
HBA18_07425 CDS
T06511
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
scot
Salinivibrio costicola
Pathway
scot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HBA18_07425 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scot03400
]
HBA18_07425 (sbcB)
Enzymes [BR:
scot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
HBA18_07425 (sbcB)
DNA repair and recombination proteins [BR:
scot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HBA18_07425 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HBA18_07425 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HBA18_07425 (sbcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
AbiEi_4
Motif
Other DBs
NCBI-ProteinID:
QIR07348
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All DBs
Position
1:1568899..1570320
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AA seq
473 aa
AA seq
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MTDTAQPTFFIYDFETFGTHPGKDRPCQFAGVRTDSDFNVIGEPLVLFCQPPNDYLPAPE
ACLITGITPQLAVKKGLPEPEFIARIHEALSQPNTCVFGYNNVRFDDEVTRYTLYRNFYD
PYGWSWQNGNSRWDLLDVMRACYALRPEGIEWPHDENGKPSFKLEKLSVANGIEHSNAHD
AMADVYATIELAKKVKAAQPRLFNYLLTHRHKNKIKTLIDVVNMTPLVHVSGMFGTERSN
TSWIVPVAWHPENPNAVITIDLARDPAPLFELDVDALRERLYTPHHALAEDELPAPLKLV
HINKCPVLADAKTLRPEDAARLGVDREACLRHLKALKAAPELREKLVAVFAESKPFDDQD
VDSALYAGFFSKSDQSAMEIIRARDPENLAALDLSVDDWRIKPLLFRYRARNYPWTLTDA
ERQKWFMHRRDYFEAHLPAYMENLQQLVDAQQDDEHQLKILKAVYHYVESLVS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacaccgcccagccaacgttttttatctacgactttgagacctttggcacccac
ccgggtaaagaccgcccttgtcagtttgccggcgtgcgcactgatagcgacttcaacgtt
attggcgagcccttagtgctgttttgtcagccaccgaatgattatttgcccgcaccagaa
gcctgcttaatcaccgggatcacaccacagttagcggtgaaaaaaggcttacctgagccc
gaatttatcgcccgtatccatgaggcgctctctcagccaaatacctgtgtcttcggatat
aacaatgtacgctttgatgatgaggtgacccgctacacgttgtaccgtaacttttatgat
ccgtacggttggagttggcaaaacggaaattcacggtgggatttactcgatgtgatgcgc
gcttgctatgcgttgcgccccgagggtattgagtggccgcatgatgaaaatggcaagcca
agctttaagctggaaaaactctcggttgccaacggcattgagcacagtaatgcgcatgat
gctatggcggatgtatacgccaccattgagctggccaaaaaagtaaaagctgcgcaaccg
cgtttattcaattatttgctgacccatcgccataaaaacaaaatcaaaaccctgattgat
gtggtgaatatgaccccactggttcatgtctcgggtatgtttggcaccgagcgaagcaac
accagttggatcgtgccggttgcttggcatcctgaaaatcccaatgcggtgatcaccatt
gatttggcgcgagacccagcaccgctttttgagctggatgtcgatgcgctgcgcgagcgt
ttgtatacgcctcatcatgcactcgcggaggatgaattaccggcaccactgaaactcgtg
cacatcaacaaatgcccggtcttagctgatgccaaaacgctacgtccggaagatgctgcg
cgcttaggggtggatcgcgaagcctgcttgcgtcatctaaaagcgctcaaagccgcacca
gagctaagagaaaaacttgttgccgtctttgccgaatcaaaaccctttgacgatcaggac
gtcgatagtgccctatatgcaggctttttctcgaaaagtgatcaaagtgcgatggaaatt
attcgagcgcgcgatcctgaaaaccttgccgcgctcgatttgagcgttgacgactggcgc
ataaagccgctgctgttccgctatcgcgcgcgtaattatccgtggacactgactgacgct
gagcggcaaaagtggtttatgcaccgtcgcgactatttcgaggcccacttgcctgcatac
atggaaaacttacagcaattggtcgatgctcaacaagacgatgaacaccagctgaagatc
ctcaaagcggtgtaccactatgtggaatccttggtcagttaa
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