Salinivibrio costicola: HBA18_07630
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Entry
HBA18_07630 CDS
T06511
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
scot
Salinivibrio costicola
Pathway
scot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBA18_07630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scot03019
]
HBA18_07630
Enzymes [BR:
scot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HBA18_07630
Messenger RNA biogenesis [BR:
scot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HBA18_07630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
P-loop_SecA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QIR06257
UniProt:
A0ABX6K501
LinkDB
All DBs
Position
1:complement(1618022..1619416)
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AA seq
464 aa
AA seq
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MSFSSLGLSAPLLKAVQEQGYTTPSPIQEKAIPAVIEGHDVMAAAQTGTGKTAGFTLPIL
ERLQAGKRARPNHVRTLILTPTRELAAQVHKNVEQYSQYTSLSSTVVFGGVKINPQMMKL
RKGADVLVATPGRLLDLYQQNAVRFSQLEVLVLDEADRMLDMGFIRDIRKILGLLPAKRQ
NLLFSATFSDEIRQLAKELVNNPVEISVNPANQTATGVEQCIYPADKKKKAPMLLSLIAD
NNWQQVLVFSKTKHGANRLSRYLEEYGVSAAAIHGNKSQGARTKALEKFKTGEVRVLVAT
DIAARGIDIAHLPQVVNFDLPHVAEDYVHRIGRTGRAGAVGNAVSLVCADEAKDLFAIER
LIKQVLPRHTLADFPVTNPLPESKLDTRPIKPKKPKKNKPRQDGQRSGDNARGHKPVGKN
RRHTDSAGDGKSRGTGNRPPRTRSDSNGANKPRRARPAAAKNSA
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgagtttctcctctttaggactatctgcaccactattaaaagccgtgcaagagcaaggc
tataccacaccttcaccgattcaggaaaaagcgatccctgcggtgattgaaggacacgat
gtcatggcggcggcgcaaaccggtaccggtaagaccgcgggctttaccttaccgattttg
gagcgtttgcaggcgggtaaacgtgctcgccccaaccatgtacgcaccttgatcctgacg
ccaacgcgcgagcttgctgcgcaagtacacaaaaacgtggagcaatacagccaatacacg
tcgctcagctcaaccgtggtatttggtggtgtgaagatcaatccgcagatgatgaaactt
cgcaaaggcgctgacgtgctggtggccactccgggacgcttgctggatctgtaccagcaa
aatgccgtgcgcttttctcagcttgaagtgctggtcttggacgaagccgatcgtatgctc
gatatgggctttattcgtgacattcgtaagatcttgggcttgctgccggctaagcgccag
aatttgctgttctccgccacattctcggatgaaattcgccaactggcgaaagagctagtc
aacaatccggttgagatctcagtcaatcctgcgaaccaaaccgcgactggggtagagcaa
tgcatttaccccgcggataagaagaaaaaagcgccgatgctgctgtcactgattgccgat
aataattggcagcaggtgttagtgtttagcaaaaccaagcatggcgctaaccgtttgtcg
cgttatctcgaagagtacggtgtcagcgcggcggcaattcatggcaataagagtcaaggc
gcgcgaacgaaagcgttagagaagtttaaaaccggtgaagtacgggtattggttgccact
gatattgccgcacgagggatcgatattgcccatttaccgcaagtggtaaattttgattta
ccccatgtggcagaagactatgttcaccgtattggtcgtactggtcgtgcaggtgccgtg
ggcaatgcagtgtctttggtttgtgcggacgaagcgaaagatttgttcgccattgaacgc
ttaattaaacaggtattgccgcgtcatactctggcggactttcccgtcaccaatccgttg
ccagagtcgaaattggatacgcgtccaataaagccaaagaaaccgaaaaagaataaaccg
cgtcaagacggacaacgctctggcgataacgcgcgcggacacaaaccggtaggcaaaaat
cgacgtcataccgatagcgcaggcgacggtaagtcacgtggtaccggcaatcgcccacca
cgcacgcgcagcgatagcaacggcgcgaataagccacgccgcgcgcgacccgctgcggca
aaaaacagcgcctaa
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