Salinivibrio costicola: HBA18_11055
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Entry
HBA18_11055 CDS
T06511
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
scot
Salinivibrio costicola
Pathway
scot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBA18_11055 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scot03019
]
HBA18_11055 (pnp)
03016 Transfer RNA biogenesis [BR:
scot03016
]
HBA18_11055 (pnp)
Enzymes [BR:
scot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HBA18_11055 (pnp)
Messenger RNA biogenesis [BR:
scot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HBA18_11055 (pnp)
Transfer RNA biogenesis [BR:
scot03016
]
Prokaryotic type
tRNA degradation factors
HBA18_11055 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
KH_2
aRib
S1_2
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
QIR06859
UniProt:
A0ABX6K5W4
LinkDB
All DBs
Position
1:2349628..2351763
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AA seq
711 aa
AA seq
DB search
MNPIVKTFQYGNHTVTLETGVMARQATGAVMASMDDTSVFVSVVGKKEAAEGQGFFPLTV
NYQERTYAAGKIPGGFFKREGRPSESETLTARLIDRPIRPLFPDSFKNEVQVIATVVSVN
PAVSPDVVAMLGTSAALAISGIPFNGPIGAARVGYINDELVLNPSEAELDNSRLDLVVAG
TEGAVLMVESEADRLSEEQMLQAVMFGHDQQQVAINAIKEFAAEVGTPAWDWQAPEVNAA
LQSRVAEMAQGPLAQAYQITEKMARYEQVGNVKQEVVAALLEQDETLDEREILDMLGDLE
KKVVRSRIIAGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRD
AQIIDSIMGERQDSFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSQDEF
PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPVKKSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTDDGVTALQMDIKIEGITKEIMQIALNQAKGARLHILDVMDQAI
GSAREDISEFAPRIHTISINPDKIRDVIGKGGAVIRQLTEETGTTIEIDDDGTVKIAATD
GAAAQDAISRIEALTAEVEVGRIYTGKVQRIVDFGAFVSVIGGKDGLVHISQIADQRVEK
VSDFLEIGQEVEVKVLEIDRQGRIRLSMKEAASDKAATEAAPADDAPATDA
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaatcgtaaaaacattccaatacggcaaccataccgtgacgttggaaaccggt
gtgatggctcgccaagccaccggtgcggtaatggcaagcatggacgatacctcagtattc
gtctctgtcgtcggtaaaaaagaagcggcagaaggccaaggcttcttcccactgaccgtg
aactaccaagagcgtacttacgcggcaggtaaaatcccaggtggtttcttcaagcgtgaa
ggtcgtccttcagagtcagaaaccctgacagcacgtttgattgaccgccctattcgtccg
cttttccctgactcgttcaaaaacgaagttcaagtgattgcgaccgtagtatcggtaaac
ccagctgttagcccagatgtggttgccatgctaggtacctctgcggcactggcgatttct
ggtatcccattcaatggcccaatcggtgcagcacgtgttggttatatcaacgatgagctg
gtattgaacccaagcgaagcagagctggacaacagccgtcttgaccttgtggttgccggt
actgaaggcgcggtgctgatggttgaatctgaagccgatcgcctaagcgaagaacaaatg
ctgcaagcggtgatgtttggtcatgaccaacaacaagtcgctatcaacgctattaaagag
ttcgccgcggaagttggtacccctgcgtgggattggcaagcaccagaagtgaatgctgcc
ctgcaatcacgtgtcgcagaaatggcgcaaggcccactcgcacaagcgtatcaaatcact
gaaaaaatggcgcgttatgagcaagtcggtaacgtgaagcaagaggtggttgccgctctg
cttgagcaagacgagaccctcgacgagcgtgaaatcctcgatatgcttggcgacctagag
aaaaaagtcgtgcgtagccgcatcattgccggcgagccacgtatcgatggccgcgaaaaa
gacatggttcgtgcgctagacgtacgtaccggtgtgctacctcgcacacacggcagcgcg
ttgttcacgcgtggtgaaacgcaggcgctggtgaccgccacactgggtacccaacgtgat
gcacagatcatcgactcaatcatgggtgagcgtcaggacagctttatgctgcactacaac
ttccctccatactgtgtcggtgaaaccggttttgtcggttcaccaaagcgtcgtgaaatc
ggccatggccgtctcgcgaaacgtggtatcgctgcggtaatgccaagccaagacgaattc
ccatacaccgtccgtgtggtctctgagatcactgagtcaaacggctcatcgtcaatggcg
tcggtatgtggtacctctctggcactgatggacgccggtgtaccggtgaaaaaatcagtc
gcgggtatcgcgatgggtctggttaaagaaggggacgattttgtcgtactttctgacatc
ctcggtgatgaagaccaccttggcgatatggactttaaagtcgcgggtaccgatgacggt
gtgactgcactgcagatggacatcaaaatcgaaggtatcaccaaagagatcatgcaaatc
gctctaaaccaagcaaaaggtgcgcgtctgcatatcttggatgtgatggatcaagcgatt
ggttcagcgcgcgaggatatctctgagtttgcgccacgtattcacaccatcagcatcaac
ccagataagatccgtgatgtgatcggtaaaggtggggcggtgatccgtcagctaaccgaa
gaaaccggcaccacaatcgaaatcgatgacgacggtacggtgaaaattgctgcaactgac
ggcgcggcggcacaagatgcgatttctcgtatcgaagccttgaccgctgaagtggaagtg
ggccgcatctacacgggtaaagtccagcgtatcgttgatttcggtgcgttcgtgtctgtg
atcggtggtaaagatggtctggtacacatctcgcaaatcgcagatcagcgcgttgagaaa
gtctctgacttcctcgaaatcggccaagaagtcgaagtgaaagtgctagagatcgaccgc
caaggtcgtatccgtctaagcatgaaagaagcggcttcggataaagcagccactgaggct
gctcctgccgatgatgcacctgcaactgacgcttag
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