Salinivibrio costicola: HBA18_11330
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Entry
HBA18_11330 CDS
T06511
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
scot
Salinivibrio costicola
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scot03000
]
HBA18_11330
Transcription factors [BR:
scot03000
]
Prokaryotic type
Helix-turn-helix
Other families
HBA18_11330
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Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_2
Mg_chelatase
AAA_16
AAA
HTH_7
AAA_5
HTH_29
HTH_22
HTH_17
HTH_50
HTH_23
HTH_IclR
TIP49
HTH_30
TrmB
HTH_1
YdaS_toxin
AAA_7
Motif
Other DBs
NCBI-ProteinID:
QIR06908
UniProt:
A0ABX6K950
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All DBs
Position
1:complement(2422330..2423667)
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AA seq
445 aa
AA seq
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MGLHTGSETNLSSLVVVGGPYEPWIATLEQAGWRCHRCYDLRAAQSLLQDIGPCIGIVDL
SHDDFSLNGVASMVNRNKQVRWLALVREEQLGNEAICQFIVSFCIDYFTSPVPNSQLMST
IGHQLGMLRLERQVWPHLGDHSDMGLEGKSPAMKKLRDQVRRVAPTDVSVLVAGESGTGK
ELVALAIHNASTRAKGPFESIKCSALADEQMQQELLGDDETPGKIRQCHKGTLFFDEIGD
LPLHLQSHLLHLLQEGMLDINHDKYNRDLDVRVIASTHMDLEKRVAEGLFREDLYYRLNV
LRINMPSLKDRQADVTDLADYFLLKFARQYNTQARTFSEEAKSVLSAYSWPGNVRELINQ
VKRAVLLADHLVIEAEHLDLPRQGDYKQSLRKIREESERDALIAVLESNKGQVSAAAREL
GVSRATMYRLLNKHNLIPTPRTFRQ
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgggattacacacagggagtgaaacaaacttgagctcattggtggtcgtcgggggcccg
tatgagccttggatagcaaccctggaacaagcaggctggcggtgtcatcgttgttatgac
ttgcgggcagcacaatctttgctgcaagacattggcccctgtattggtattgttgactta
agccacgatgattttagcctcaatggcgtcgcgtctatggttaaccgtaacaagcaagtg
cgttggttggccttggtgcgtgaagagcaattggggaatgaagcaatctgccagtttatt
gtcagcttttgcattgattacttcacctcgccagtgccgaactcacagctgatgagcacc
attggtcaccaattggggatgctgcgtttggagcgtcaggtgtggccccatctgggcgat
cacagtgatatgggcttggaaggcaaaagtcctgcgatgaaaaagctgcgagatcaggtg
cgacgtgttgcgccgaccgatgtgtctgtgctggtggccggtgagagtgggacaggtaaa
gagttagtcgcactggcgattcataacgcctctacccgcgccaaaggcccgtttgagtcg
attaaatgctcggcattggccgacgagcaaatgcagcaagaattattgggtgatgacgag
acgcccggaaaaatacgccaatgccacaaaggcaccttattttttgatgaaatcggtgac
ttaccactgcacttacaaagccatttgttgcatttattgcaagaggggatgctggatatc
aatcacgacaagtacaatcgtgatctggatgtgcgtgttatcgcctcaacccatatggat
ttagagaagcgggtcgctgaaggattgttccgcgaagatctgtattaccggctgaatgtg
ttgcgtattaacatgccgtcgttgaaagataggcaagccgatgttactgacttagccgac
tattttctgctcaaatttgcccgtcaatataatacccaagcgcgaacgttttcagaggaa
gccaagagtgtattaagcgcctattcatggccggggaacgtgcgggagttaatcaatcaa
gtcaaacgggccgtgcttcttgccgatcacttggtcatcgaagcggaacatctcgattta
cctcgccaaggggactacaaacaaagtctgcgcaaaatacgcgaagagtcagagcgcgat
gcattgattgcggtacttgagtcgaacaaaggacaggtgtcggcagcggcgagagagttg
ggcgtgtcgcgagccaccatgtatcgcttgctcaacaaacataacttgatcccgacccct
cgcacatttcgtcaatag
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