Salinivibrio costicola: HBA18_11345
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Entry
HBA18_11345 CDS
T06511
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
scot
Salinivibrio costicola
Pathway
scot03410
Base excision repair
scot03430
Mismatch repair
scot03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HBA18_11345 (recJ)
03430 Mismatch repair
HBA18_11345 (recJ)
03440 Homologous recombination
HBA18_11345 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scot03400
]
HBA18_11345 (recJ)
DNA repair and recombination proteins [BR:
scot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HBA18_11345 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HBA18_11345 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HBA18_11345 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
PIGA
Motif
Other DBs
NCBI-ProteinID:
QIR06911
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Position
1:complement(2426623..2428353)
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AA seq
576 aa
AA seq
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MIEIKRRMPTVTPAFSDDIPPLLQRLYANRGLREDSELNRSVAGLHQYQALTGIEGAVAL
LSEAIATHKSILIVGDFDADGATSSALSVKALRMMGATRVDYLVPNRFDDGYGLSPDVVD
QAAERDADLIMTVDNGVSSLAGVAHAKALGMQVVVTDHHLPGEQLPDADAMVNPNLNDCG
FPSKALAGVGVAFYLMLALRAHLREQGWFEQQGIAIPNLAELLDLVALGTVADVVALDAN
NRILVHQGLQRIRAGRCCPGIQALIEVANRNMATLVASDFGFALGPRINAAGRLDDMSFG
VELLLSNNIHAARRMAAELDALNQTRKEIEAGMKQEAVAWCERLIAEKSEQDLPVGLALF
QRDWHQGVIGILASRLKEQFHRPVIAFADGGDGTIKGSARSIPGLHMRDTLDRIDTQHPG
LIKKFGGHAMAAGLTIDESEFERFARLFDTQVREAVSDDDLKGVLLSDGELSSRELSIET
AELIQAGGPWGQGFPEPQFDGTFKVLQQKLVGSKHLKLMVEHPDGGAMIDAIAFNIDVRR
WPDPSVKQMRLVYRLDINEFRGNRSAQLIVSHLESA
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgatagagataaaacgacgaatgccgacggttacgccggcctttagtgatgatattccc
cctttactacaacgcttgtatgccaaccgaggactgcgcgaagacagtgagttaaaccgc
agtgtggcaggcttgcatcaataccaagcgttaaccggtatcgaaggcgctgtcgcacta
ctgtcggaggcgatcgcaacccacaagtcgattctgattgtgggagactttgacgctgat
ggcgcgacctcgtcggcgctctcggtaaaggcgcttcgcatgatgggtgcaacgcgggtc
gattatttagtgcccaaccgttttgacgatggttatggactgagtcctgacgtcgtcgat
caagcggctgagcgtgacgctgatctcatcatgaccgttgataatggtgtgtcatcgttg
gccggagtcgcgcatgccaaagcgctaggcatgcaagtggtagtgaccgatcaccaccta
cctggagagcagcttcccgacgcagatgcgatggtaaaccctaatctaaatgactgtggc
ttcccgtccaaagcccttgccggtgtcggggtggcattttatttgatgctggcattgcgg
gcccatttgcgtgaacaaggttggtttgagcaacaaggcattgcgataccgaacttggcg
gaactgcttgatttggttgcattggggacggtggctgacgtagtggcattggatgccaac
aaccgtatcttggtgcaccaaggcttacagcgcattcgggcaggccgatgttgccccggt
attcaggcactgatcgaagtcgcgaaccgaaatatggcgaccttggtggccagcgacttt
ggatttgctttaggcccaaggatcaacgcggcggggcgactggatgatatgtcgtttggg
gtggaactgttactgagcaacaatatccacgccgcgcgacgcatggccgcggagttggac
gcacttaatcaaacccgcaaagaaattgaagccgggatgaagcaagaagcggtagcatgg
tgtgagcgcttgattgccgaaaaaagcgaacaagacttacccgttggtctcgcactcttt
caacgagattggcatcaaggcgtgattggtattttagcctcgcgcctgaaagagcagttt
catcgtcccgtgatcgcttttgccgatgggggcgatggcaccattaaaggctcggcgcgt
tcgattccaggattgcacatgcgcgatacgctggatcggatcgatactcagcatcccggc
ttgatcaaaaagtttggcgggcatgccatggcggcagggctgactatcgatgagagtgaa
tttgagcgttttgcccgtttgtttgatacgcaagtacgtgaggcagtcagcgacgatgat
ctcaaaggcgtactactcagtgatggggaactatcgagtcgtgaattgagcatcgaaacc
gcggagcttatccaagcggggggaccttggggacaaggatttccggagccgcaatttgat
ggcacatttaaggtgttacagcaaaagctggttggcagtaagcatctgaaattaatggtg
gagcatccagacggtggtgccatgattgatgcaattgcgtttaatatcgatgtgcgccgt
tggccggacccgagtgtgaagcagatgcggttagtctaccggctggatattaacgagttt
cgtggtaatcgcagtgcgcaattgattgtttctcatctggagagtgcttaa
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