Salinivibrio costicola: HBA18_11830
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Entry
HBA18_11830 CDS
T06511
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
scot
Salinivibrio costicola
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scot03021
]
HBA18_11830 (rapA)
Transcription machinery [BR:
scot03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
HBA18_11830 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIR06992
LinkDB
All DBs
Position
1:2537407..2540316
Genome browser
AA seq
969 aa
AA seq
DB search
MSFALGQRWISDTEHDLGLGTVVSVDGRTVTLMFPASDETRLYASHDAPVTRVMFNPGDE
VESHEGWTMTVSRVEENDGVLTYIGTRNDTGEDEVSLREILLSHQIRFNKPQDKLFAGQL
DRMDRFALRYRALTNQHQQLRSPLRGLTGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLAGRAERVLIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEALA
DAYNPFDTQQLVLCSLEFLRKNRRRVEQVCETHWDLLVVDEAHHLSWAPDAPSREYQIIE
SIAEHTPGVLLLTATPEQLGQQSHFARLRLLDPDRFYDYDAFVEEAAQYAPVAEAVEALL
ADAPLSDAAQHSIRTLLQSDDLEQRLALIHSDDESTQRDARQQLIDDLMDRHGTGRVLFR
NTRAAISGFPTRKLHMHALALPKQYQTAMRVAEMMGGRLAGEQKAVQNLYPEDIYQQFEG
DSASWWGFDPRIDWLLDYLKTHRNDKVLIICSRAQTALTLEQALREREGIRGTVFHEGMS
IVERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFAHQLVMFDLPMNPDLLEQRIGRLDR
IGQQQDIAIHVPYLEGTAQTILARWYHEGLNAFEDTCPTGRAVFEQYGETLLTLLAANQQ
DDALSTLIEDSAAMNQRLKAEMEQGRDKLLEMHSHGGDAAKQLAQTIADQDGDTGLVTFT
LGLFDTIGVNQDDKGENALVVTPSEHMMVPSYPGLPTDGCTITFDRDTALSREDVQFVSW
EHPIVRGGIDLLLSENIGTTAVSLLKNKALPVGTLFLELIYVVDAQAPKSSGIHRFLPQT
PVRVLLDANGNDLSANVEFEGFHRQLSPVNRHLGSKMVNSVQSQVHRLIEKSEPLAEKAL
GEIQTRAHQEMESELTQALARLEALKTVNPNIRDDELDALREQISTLSHHIQHAQIELDA
LRLIVVSHQ
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgcgcttggacaacgttggatcagtgatacggagcatgatctaggactgggc
accgtggtgtctgttgacggccgtaccgtgaccctaatgtttcctgctagtgatgaaaca
cggctgtatgccagccacgatgcacccgttacccgggtgatgttcaacccgggcgatgag
gtggaaagccatgaaggctggaccatgacagtctcgcgtgttgaggaaaacgacggggta
ttaacctatatcggtacacgcaatgataccggcgaagacgaggtgtctctgcgcgaaatc
ttgctcagccaccagattcgttttaacaaaccgcaagacaagctgtttgctggccaactt
gatcgcatggatcgctttgccttgcgttatcgtgcgctgaccaatcaacaccagcaactg
cgcagcccattacgcggtctaaccggcatgcgtgccggcctgatcccccatcagctttac
attgctcatgaagtcggtcgccgtcatgcgccacgcgtattgcttgccgatgaagtcggc
ttgggtaaaaccattgaagcgggcatgatcatccaccagcaggtgctggcaggtcgcgca
gagcgagtcttaattgtggtgcccgaaaccttgcagcaccaatggttggtcgagatgatg
cgccgctttaatctgcacttctcaatttttgatgaagagcgctgtgttgaggccctagcg
gatgcctacaacccctttgatacccaacagttggtcctgtgttcgctggagtttttgcgt
aaaaatcgccgtcgtgtcgaacaagtctgtgagacccactgggatctgctagtcgtcgat
gaggcgcatcacctgtcatgggcaccggatgcccccagccgcgaataccaaatcattgag
agcatcgccgaacatacaccgggcgtgttgctactcactgccacaccggaacaacttggc
caacaaagccactttgcccgcctgcgtctgctcgacccagatcgcttctacgattacgac
gcctttgttgaagaggcagcgcaatacgcgccagtagcagaagcggttgaagctttgctt
gccgatgcgcccctgagtgatgcggcacaacatagcatccgcaccttgctccaaagcgac
gatttggagcagcgcttggccctcatccacagtgatgatgagtcgactcagcgcgatgct
cgccaacagttaattgacgatctcatggaccgccacgggaccggtcgtgttctcttccgt
aatactcgtgcagcaatcagcggctttccaaccagaaagctgcacatgcatgcacttgct
ttacctaaacagtatcaaacggccatgcgcgttgccgagatgatgggcggccgtctcgca
ggggaacaaaaggcggtacaaaacctttatcctgaagatatttatcaacagttcgaaggc
gacagtgccagctggtggggctttgatccgcgtatcgattggttgctcgattacctgaaa
acgcaccgtaacgataaagtcctgatcatttgttcacgggcgcaaaccgcattgacctta
gagcaggcgctgcgtgagcgcgaagggatccgtggcactgtgttccacgaaggcatgtcg
attgtcgagcgagacaaagccgcggcttactttgcccaagaggaagggggtgcacaggtg
ttgatctgctcggagatcggctcagaaggccggaacttccagtttgcgcatcagttggtg
atgttcgacttacccatgaacccagaccttttggagcagcgtatcggtcgtcttgaccgt
atcggccagcaacaagatattgccattcacgtcccctatcttgaaggcaccgcgcaaact
attttggcacgctggtatcacgaaggtctcaacgcgtttgaagatacctgcccaaccggt
cgtgcggtattcgagcaatacggcgagaccttactgaccctgctggccgcgaaccaacaa
gacgacgccctcagcacgctgatcgaagacagcgctgccatgaaccagcgcctcaaagcg
gaaatggagcaaggtcgcgataaactgttagaaatgcattcacatggtggggatgcggcg
aaacagttagcgcagacgattgccgaccaagatggcgataccggcttggtcacctttacc
ttggggctatttgataccatcggcgtcaaccaagatgacaaaggggaaaatgcgctggta
gtcacaccatcagaacatatgatggttccgagttacccgggtctccccaccgatggctgc
accatcacctttgatcgcgatacagcgctcagtcgcgaagacgtccagtttgtctcgtgg
gagcaccctatcgtgcgtggcggtatcgacttgctactgagcgaaaacatcggcaccacc
gcagtctctttgctcaaaaacaaagcgctgccggtgggcaccttgttccttgaactcatc
tatgtagtggatgcccaagcgccgaaatcaagcgggattcatcgcttcttaccgcaaaca
ccggtacgtgtcttgctggatgcgaatggcaacgatttatccgccaatgtggagtttgag
ggtttccatcgccagttaagccccgtcaatcgccatttgggcagcaaaatggttaactcg
gtacaaagccaagttcaccgtttgattgaaaaaagtgagcctttagctgaaaaagcactg
ggggagattcaaacccgtgctcaccaagaaatggaaagcgagctgacccaagccttggcg
cgtttagaggcactcaaaaccgtcaaccccaatatccgtgatgatgagttggatgcccta
cgcgagcaaatcagcaccctttcacatcacattcaacacgcgcagattgaattggacgcc
ttgcgtctgattgtggtcagtcatcaataa
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