KEGG   Salinivibrio costicola: HBA18_12625
Entry
HBA18_12625       CDS       T06511                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
scot  Salinivibrio costicola
Pathway
scot03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:scot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HBA18_12625 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:scot03021]
    HBA18_12625 (rpoC)
   03400 DNA repair and recombination proteins [BR:scot03400]
    HBA18_12625 (rpoC)
Enzymes [BR:scot01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HBA18_12625 (rpoC)
Transcription machinery [BR:scot03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HBA18_12625 (rpoC)
DNA repair and recombination proteins [BR:scot03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HBA18_12625 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Peptidase_M23
Other DBs
NCBI-ProteinID: QIR07132
LinkDB
Position
1:complement(2707176..2711390)
AA seq 1404 aa
MKDLLKFLKAQHKTEEFDSIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFESYVVIEPGMTNLERGQMLSEEQYLDALEEWGDEFDARM
GAEAVKALLANMDLSVETEQMREELEETNSETKRKKITKRLKLVEAFLQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKVNGKGEGMYLAGPGEAEKVYRTG
YAELHTRVKVRIKQVDIDEMGARTEKVSLVDTTVGRAMLWTIVPEGLSFDLVNQPLGKKQ
ISNLLNTCYRKLGLKDTVIFADQIMYTGFAYAALSGTSVGIDDMVIPQAKYDLIEAAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANEQVAKAMMDNLSNETVINRDGEEETQKSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTETDCGTEGGIHMMAVIEGGDVKEALRERVL
GRVVAEDVLKPGTDEVLAPRNTLLDEKWCDILEHHSVDKVKVRSVVTCETDFGCCAHCYG
RDLARGHLVNHGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAENNIQVKNKGSMHL
HNVKSVTNSDGKLVITSRASEMTIVDEFGRTKESYKVPYGALLSKKDGEAVEAGDVVANW
DPHTMPIITEVEGSVRFVDMIDGVTMQRQTDELTGLSSIVVMDASERPSSGKDKRPAVKL
VDAQGNDMMIPGTDMPVQYFLPGNAIVQLDDGANVGIGDTLARIPQESGGTKDITGGLPR
VADLFEARKPKEPAILAEITGTVSFGKETKGKRRLIITPEEGQAYEEMIPKWRQLNVFEG
EKVEKGDVIADGPESPHDILRLRGVHAVAEYITNEVQDVYRLQGVKINDKHIETIVRQML
RKVTIKSAGDTDFLEGEQVEYSRVTIANRELEAEGKRPATYGRDLLGITKASLATESFIS
AASFQETTRVLTEAAVAGKRDDLRGLKENVIVGRLIPAGTGFAYHKDRQAKRAEPEQPVA
PQIDAEQASQDLAALLNAGLNDDN
NT seq 4215 nt   +upstreamnt  +downstreamnt
gtgaaagacttacttaagtttctgaaagcacagcataagaccgaagaatttgattcgatc
aaaatcggtctagcctcaccagacatgatccgttcatggtcgtttggtgaagtgaaaaag
ccagaaaccatcaactaccgtacctttaagcctgagcgtgacggtttgttctgtgcacgt
atcttcggcccggtcaaagactacgaatgtctttgtggtaaatacaagcgcctgaagcac
cgtggcgtcatttgtgaaaaatgtggcgttgaagttactcagaccaaagtgcgccgtgag
cgtatgggtcacattgagctggcttcacctgttgcccacatttggttcctgaagtcgcta
ccatcacgcattggtttgctgatggacatgccgctacgtgacatcgagcgtgtgctttac
tttgaatcctacgtggtgattgagccaggtatgaccaaccttgagcgtggtcagatgctg
tctgaagagcagtacttggacgcgttggaagagtggggcgacgaatttgatgcgcgcatg
ggcgcagaagcagtgaaagcactgctggcgaacatggatctgtcagttgagacagagcaa
atgcgtgaagagttggaagaaaccaactctgaaaccaaacgtaagaagatcactaagcgt
ttgaagctggtggaagccttcttgcaatcaggtaacaaccctgagtggatgatcctgact
gtgctgcctgtgttgccgccagacttgcgtccattggtaccgttggacggtggtcgtttt
gcgacctcggatctgaacgacctttaccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgcctgcttgatcttgctgcaccagacatcatcgtgcgtaacgaaaaacgcatgctgcaa
gagtctgtggatgccctgcttgataacggtcgtcgtggtcgtgccatcactggctcgaac
aagcgtccgcttaaatcgctggctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactctggccgttcggtaatcaccgtaggtccatac
ttgcgtctgcatcagtgtggtctgccaaagaaaatggcactagagctatttaaaccgttt
atctacggcaagcttgagactcgtggtctcgcgaccaccatcaaagccgccaagaagatg
gttgagcgcgaagaagctgtggtatgggatatcttggatgaagtcatccgtgaacaccct
gtcctgctaaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaacctgtg
cttatcgaaggtaaagcgattcagctacacccattggtgtgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgttgatgatgtcgaccaacaacatcctatcgccagcatccggtgatcctatcatc
gtaccgtctcaggacgtggtactgggtctttactacatgacccgtgagaaggtgaacggc
aaaggcgaaggcatgtacttggcaggcccaggcgaagccgaaaaggtttaccgtactggc
tatgctgaactgcatacgcgtgtaaaagtgcgtatcaagcaagttgatatcgatgagatg
ggcgctcgtaccgagaaagtatcactggttgataccaccgtcggtcgtgccatgctgtgg
accatcgtgccggaaggcctgtcatttgacttggttaaccagccgttgggtaaaaagcaa
atctctaacttgctcaacacctgttaccgtaagctgggtctgaaagacaccgttattttt
gctgaccaaatcatgtacaccggttttgcctacgcggcactgtcgggcacctctgtcggt
atcgacgatatggtgatcccacaagccaagtacgacttgatcgaagcagcagaagcagaa
gttgcggaaatccaagagcagttccaatctggtctggttaccgcgggcgaacgttacaac
aaagtgatcgatatctgggctgcagcgaacgaacaagttgcaaaagccatgatggataac
ctgtctaacgagacagtgattaaccgtgacggcgaagaagaaacccagaagtcgttcaac
agtgtttacatgatggccgactcaggcgcacgtggttctgctgcacagattcgtcagcta
gccggtatgcgtggtctgatggcgaaaccagatggctctatcatcgaaacgccaatcacg
gcgaacttccgtgaaggcctgaacgttcttcagtactttatctctacgcacggtgcgcgt
aagggtcttgcagataccgcattgaagacagcgaactcaggttacctgactcgtcgtctg
gttgacgtagcccaagacgtggtcgtgaccgaaaccgattgtggcaccgaaggcggcatc
cacatgatggcggttatcgaaggcggtgacgtgaaagaagcactgcgtgagcgtgtgctg
ggtcgtgtcgtcgctgaagacgtactgaagccgggtactgacgaggtgcttgcaccacgt
aacaccctgttggatgagaagtggtgtgacattcttgagcatcactctgtcgataaggta
aaagtacgctctgtcgtaacctgtgaaactgacttcggttgttgtgcacactgttacggt
cgtgacttggcacgtggtcacttggtgaaccacggtgagtctgtgggcgttatcgcggca
cagtctatcggtgagccaggtacacagctgaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggcggcagaaaacaacatccaggtgaagaacaaaggttctatgcacctg
cacaatgtgaaatccgtgaccaatagcgacggtaagctagtgattacctcgcgtgcgtca
gagatgaccattgttgatgagttcggtcgtacgaaagaaagctacaaagtgccttacggt
gccttgctgagcaagaaagatggtgaagcggttgaagctggcgacgttgttgctaactgg
gatccgcacaccatgccaatcatcaccgaagtagaaggtagcgttcgcttcgtagacatg
attgatggcgtcaccatgcagcgtcaaactgatgaactgactggcctgtcttctatcgtg
gtaatggatgcttctgagcgcccatcatccggtaaagataagcgtcctgcagtgaaactg
gttgatgcgcaaggcaatgacatgatgatcccaggcactgatatgccggttcaatacttc
ttgccgggtaacgcaattgttcagcttgatgacggcgcgaacgttggcattggtgacacc
ttggcgcgtatcccgcaagaaagcggcggtaccaaggatatcaccggtggtctgccacgt
gttgccgacctgttcgaagcgcgtaagccaaaagagccagctatcttggcggagatcaca
ggtactgtttccttcggtaaagaaaccaaaggtaaacgtcgcctgatcatcaccccagaa
gaaggccaagcctacgaagagatgattccaaaatggcgtcagctcaacgtattcgaaggt
gaaaaagtcgagaaaggtgatgtgatcgctgatggtccagaatcaccgcacgacatcttg
cgtctgcgtggtgttcacgcagtggctgagtacatcaccaacgaagttcaagacgtttac
cgtctgcaaggcgttaagatcaacgataagcacatcgagaccatcgtgcgtcagatgttg
cgtaaggtgaccattaagtctgcaggtgataccgacttcttggaaggcgagcaagtggaa
tactcacgtgtgaccattgctaaccgtgaacttgaagcggaaggcaagcgtccagcgacc
tatggtcgtgacctgctgggtatcactaaagcctcgttggcgactgagtcattcatctca
gcggcatcgttccaggaaaccacgcgcgtgctgacagaagcagccgtagcgggtaaacgt
gatgacttacgtggtctgaaagagaacgtgattgtgggtcgtttgatcccagccggtact
ggtttcgcgtatcataaagatcgtcaagccaaacgtgctgagcctgaacagcctgttgca
ccacagattgatgctgagcaagcctcacaagatctggcagcactgttgaatgcaggactg
aacgacgacaattaa

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