Salinivibrio costicola: HBA18_12950
Help
Entry
HBA18_12950 CDS
T06511
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
scot
Salinivibrio costicola
Pathway
scot03030
DNA replication
scot03410
Base excision repair
scot03420
Nucleotide excision repair
scot03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HBA18_12950 (polA)
03410 Base excision repair
HBA18_12950 (polA)
03420 Nucleotide excision repair
HBA18_12950 (polA)
03440 Homologous recombination
HBA18_12950 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scot03032
]
HBA18_12950 (polA)
03400 DNA repair and recombination proteins [BR:
scot03400
]
HBA18_12950 (polA)
Enzymes [BR:
scot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HBA18_12950 (polA)
DNA replication proteins [BR:
scot03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HBA18_12950 (polA)
DNA repair and recombination proteins [BR:
scot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HBA18_12950 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HBA18_12950 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Prok-E2_E
Motif
Other DBs
NCBI-ProteinID:
QIR07185
LinkDB
All DBs
Position
1:complement(2781011..2783761)
Genome browser
AA seq
916 aa
AA seq
DB search
MATLPDNPLILVDGSSYLYRAYHASPNLTNSQGEPTGAVFGVVNMLRSLLRQFPHSHVAV
IFDAKGKTFRDDMYEQYKANRPPMPDDLRGQIEPLHKIIKAMGLPLLAVEGVEADDVIGT
LATQASNAGMPVLISTGDKDMAQLVDEHVTLINTMTNVVMDPEAVREKYGFGPEHIIDYL
ALMGDKVDNIPGVPGVGDKTATALIANLGGLDDIYANLDKIAALSFRGAKSMAKKLTEHQ
DAAYLSYQLATIKLDVELDFTPEQLVKQEPDNDTLVTMYRDLQFRRWLKELDEGDAPEEA
VSDEPIPQETTIDRSGYQTVLTRDALDTWLKKIRDAEVVAVDTETDSLNYMEANLVGISF
AVAPGEAAYVPVAHDYLEAPAQLSLDEVLEVLRPWLEDPSAAKVGQNLKYDASVFARHGI
TLKGIAYDTMLESYVYNSVAGRHDMDSLAERYLQHTCISFEEIAGKGKKQLTFNQIPLEQ
AAPYAAEDADITLRLHQYLIGKVTSDEKLKTIFEFYEMPLVSVLSRMERHGVLIDKDKLA
TQSEALHTRLIELEREAFEIAGEEFNLSSPKQLQAILFEKMGLPVVKKTPSGSPSTNEEV
LQELSLDYPLPARILEYRGLAKLKSTYTDKLPRMINAQTGRVHTSYHQAVTATGRLSSTD
PNLQNIPIRNEQGRRIREAFTAEPDHTILAVDYSQIELRIMAHLSGDKALLEAFRDGKDI
HAATAAEVMGVSLDEVTSEQRRRAKAINFGLIYGMSAFGLSRQLGIGRQEAQSYMDTYFE
RYPGVKAYMDRTREQAAEKGYVETIFGRRLYLPEIKSRNGMRRKGAERAAINAPMQGTAA
DIIKRAMILVDQWIQANAADDARLVMQVHDELVLEVKTSSLSKVESEVRKLMESAADLDV
PLIAESGHGNNWGEAH
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggcaactcttcccgacaatccgttaatcctcgtggatggctcttcgtacctttaccgg
gcataccatgcttctcctaatctcaccaatagccaaggtgaacccaccggggctgtattt
ggggtggtgaacatgctgcgtagtttgttgcgacaatttccccattcacatgtggcggtg
atttttgatgccaaagggaagacgtttcgtgacgatatgtacgagcagtacaaagccaac
cgtccacccatgccagatgacctacgcgggcaaattgaacctttgcataagattattaaa
gccatgggtctgcctttactcgcggtagaaggggtggaggccgatgatgtgattggcacg
ctcgccactcaagcctcaaacgcggggatgccggtgcttatcagtacgggtgacaaagac
atggcgcagctggtggatgagcatgtcaccttaatcaacaccatgactaatgtggtgatg
gatcctgaggcggtgcgtgaaaagtatggctttggtcctgagcatattattgattacctt
gccttgatgggcgacaaagtcgataacattcctggcgtaccgggtgtgggcgataaaacc
gcgaccgcgttgattgccaatctaggcggcttggatgatatctacgcgaacctcgataag
attgcagcgctcagcttccgcggcgcgaaaagcatggcgaaaaaactgactgagcatcaa
gacgccgcttacctgtcttatcagctcgccacgattaaattggatgttgaactggatttc
acccctgaacagctagtcaaacaagagcctgataatgataccttggtgaccatgtatcgt
gacttgcaattccgccgctggcttaaagagctggatgaaggcgatgcgccggaagaggcg
gtgtctgatgaacctatcccacaagaaaccacgattgaccgcagtggctaccagaccgtt
ctgactcgcgacgcactggacacttggctgaagaaaattcgtgacgctgaggtagttgcg
gtcgatacggaaaccgatagcctcaactatatggaagccaatctggttggtatttcattt
gccgtcgcgccaggtgaagcggcctatgtaccggtagcgcatgattatctggaagcgccg
gctcaattatcgctggatgaggtgctggaggtgttgcgtccttggttggaagatccctca
gcggcgaaagtcggccagaatctgaaatatgatgccagtgtgtttgcgcgtcatgggatc
accttaaaagggatcgcctatgacaccatgctggaatcgtacgtctataacagtgtggca
ggacgccatgacatggacagcctcgctgagcgctacttgcagcacacctgcatcagtttt
gaagagattgctgggaaaggcaagaaacaactgacctttaaccaaatccctcttgagcaa
gcggcaccttatgcggcggaagatgccgacattacgttgcgtttgcaccaatacctgatt
ggaaaagtcaccagtgacgagaaactgaaaaccatctttgagttctacgagatgccgcta
gtcagcgtgttgtcgcgtatggaacgtcatggtgtgctaattgacaaagacaagttggcg
acccaatcagaagcgttacatactcgtttgattgagcttgagcgtgaagcgtttgagatt
gccggcgaagagttcaacttaagctcgcccaagcagctacaagcgattttgtttgagaaa
atgggcctgccggtagtaaagaaaaccccatcaggtagcccttcaaccaatgaagaagtg
ctgcaagagctctcactcgattacccgctgccagcgcggattttggaataccgtgggctg
gcaaagctcaaatcgacctacacggacaaattgccgcgcatgatcaatgcgcaaaccggc
cgtgtgcacacctcgtatcatcaagccgtcaccgcgacggggcgcttatcgtccaccgat
ccgaacttacaaaatatccccattcgtaacgaacagggtcgtcgtattcgtgaagccttc
accgcggaaccggatcataccattttggcggtcgattactcgcaaatcgaattgcggatt
atggcgcacctatccggtgataaagccttgctagaagcgttccgtgacggcaaagatatt
cacgccgccaccgcagcggaggtgatgggggtaagcctcgatgaggtcaccagcgagcag
cgacgccgcgctaaagcgatcaactttggtctgatttatggcatgagtgcttttggtctg
tcccgtcaattagggattggccgtcaagaagcacaaagctatatggatacctactttgag
cgctacccaggcgtaaaggcctacatggaccgcacccgtgagcaagcggcggaaaaaggc
tatgtagaaaccattttcggtcgtcgcctttatctgcctgaaataaaatcacgcaatggc
atgcgtcgtaaaggggccgagcgcgcggcaatcaatgcgccgatgcaaggaacggcggcc
gatattattaagcgtgcgatgatactggttgatcaatggattcaagccaatgccgcggat
gacgcccgtctggtgatgcaagttcacgatgaactggtactggaagttaaaacgtcatct
ttatccaaagttgaaagtgaagtacggaaactgatggagtcggcagcggacttggacgtg
ccgctgattgccgagtctggacacggtaataactggggtgaagcccactaa
DBGET
integrated database retrieval system
