Salinivibrio costicola: HBA18_13705
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Entry
HBA18_13705 CDS
T06511
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K11908
sigma-54 dependent transcriptional regulator
Organism
scot
Salinivibrio costicola
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scot03000
]
HBA18_13705
Transcription factors [BR:
scot03000
]
Prokaryotic type
Helix-turn-helix
Other families
HBA18_13705
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_5
AAA_2
Mg_chelatase
AAA_16
AAA
RWP-RK
Motif
Other DBs
NCBI-ProteinID:
QIR07473
LinkDB
All DBs
Position
2:54821..56413
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AA seq
530 aa
AA seq
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MRNWLAYVTDLAKERRTVDLQSRFIQIVVGELKLREGMLLSPSCDGRQLVCHASDTSWSV
TDFDTPFAHVLQNVVPMHLGAEDIVYWQSNRAFAEFVGELGLFEAVNIYPLVRRDTNTKL
VVCLVGDSDALSSLWHDDPGFSQFVDVFVNQWSLLSEMEGEESRRRALRASLSDIEKRAH
QQKQAASLSVTLIGDSAPMLRLRDQIANAASSHLSVLVQGETGSGKELVARAVHDLSSRN
TQPFVPINCAAIPEHLLESELFGHVKGAFSGAVNHKEGLIAQADGGTLFLDEIGDMPMSL
QAKLLRVLESGTFRPVGGHQEQQSDFRLVSATHVHLLEKVRAGEFRQDLYYRLLQYPLHV
PALAQRKEDIRQLCFHFIQQFNQQHGTSIRDIHFQALDALLGYSFPGNVRELKHLIEYAC
AQTANGEAIKLATFGARLNMSVSSSPAPAPATDDVRSVCNSNGLSTSSRVLNIDAASIGD
LKQALMDFEQRIIADRLSQFDGDTAKVAESLGIPRRTLTYKCRKLEIKAP
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaattggctggcttatgtgactgacctagcgaaggaaaggcggactgtcgatcta
cagtctcgctttatccaaatcgttgttggtgagctcaagctacgcgaaggaatgctactc
tcacccagttgcgatggcagacagcttgtctgccacgcatcggatacgtcttggtcggta
acggattttgacaccccctttgctcatgttcttcaaaatgtcgtccctatgcatttaggt
gcggaagatattgtttattggcaatcaaatcgagcgtttgctgagtttgtcggtgagctt
ggtttgtttgaagccgtcaatatttatcctttggtacgtcgtgacacgaatacaaagctt
gttgtttgtctagtgggagatagcgatgctctatcttcgctgtggcacgacgacccaggt
ttcagtcaatttgtggatgtgtttgtgaatcagtggtctctacttagtgaaatggaaggc
gaggagagccgtcgtagagcgttaagagcctctctttctgatatcgaaaaaagggcgcat
cagcaaaagcaagcagcgagcttgtctgtcacgcttatcggagacagtgcaccgatgctg
cgtcttcgtgaccaaattgctaatgcggcatcatcgcatctctctgtgctcgttcaagga
gagacaggaagtggtaaagagttggtcgcgcgcgccgttcacgatctatcaagtcgaaat
actcagccatttgtgcctattaattgcgcggcgataccagagcacttgctcgagagtgaa
ctatttgggcatgtgaaaggggcattctctggcgccgtgaatcataaagaagggcttatt
gcacaagcggatggcggcacgctctttttggatgaaattggcgatatgccaatgagcttg
caagcaaagttactcagggtactggagtctggaacatttcgacctgtcggaggacaccaa
gagcaacaatcagatttccgattggtgtcggctactcatgttcatctacttgaaaaagtg
cgtgcaggcgagtttcgacaagatctgtattatcgcttactgcaatacccactacatgta
ccagcacttgcgcagcgtaaggaagacatacgtcagctatgtttccactttattcaacaa
tttaaccaacaacatggcactagcatccgtgatattcatttccaagcgttggatgcgcta
cttggctatagcttccccgggaacgtgcgcgagctaaaacacttaatcgagtatgcctgc
gcgcaaacggcaaatggcgaggcgataaaactggcaacctttggtgcgcgcttgaatatg
tcggtaagcagttccccagccccggctccagcaacggatgatgtccgctccgtttgtaat
tccaatggactatcgacatcaagccgcgtgctaaatatcgacgctgcgtcgataggcgac
ctgaaacaagcattgatggattttgaacagcgcattattgcggataggttgtcgcagttt
gatggtgataccgccaaagtggcggaaagcttaggtattccgagaagaacattgacttat
aaatgtcgaaaattagagataaaagcgccatga
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