Streptococcus parasanguinis ATCC 15912: HMPREF0833_10244
Help
Entry
HMPREF0833_10244 CDS
T01545
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
scp
Streptococcus parasanguinis ATCC 15912
Pathway
scp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
scp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HMPREF0833_10244 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scp03021
]
HMPREF0833_10244 (rpoD)
Transcription machinery [BR:
scp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HMPREF0833_10244 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
DBD_HTH
DprA_WH
DUF2316
Motif
Other DBs
NCBI-ProteinID:
AEH55275
UniProt:
F8DFR5
LinkDB
All DBs
Position
252104..253213
Genome browser
AA seq
369 aa
AA seq
DB search
MAKEQKDITTLDVQIAEFIRSHKQSGAATDDEINDKLVIPFTLDADGIEDLLQRIQDAGI
SITDKDGNPSARVLNNEEEPELSDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQEL
AILVEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYTKG
FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQL
DEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRS
KPLRDFIED
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagaacaaaaagatattacaacattggacgttcaaattgcagaatttatccgc
agtcataagcaaagtggggctgctacagatgatgaaattaatgataagttggttattcct
ttcacactggatgcagatgggattgaagatctcctgcaaagaattcaagatgcagggatt
tcgatcacggataaagatggcaacccaagtgcgcgtgtgttgaacaatgaagaagagcca
gaattgtcagatgaagaattgcttggaagcaactctgctaaggtcaatgacccagtacgg
atgtacttgaaagaaattggggttgttcctcttttgaccaatgaggaagaacaagaatta
gccattttggtagaacaaggtgacttggaagccaagcaacgtctagctgaggctaacctt
cgtttggttgtttccattgcgaaacgttacgttggtcgtgggatgcaatttttggatttg
atccaagaaggaaacatgggcttgatgaaggcggttgataagtttgactataccaaagga
ttcaagttctccacttacgccacttggtggatccgtcaggccatcactcgtgccattgca
gaccaagcgcgtaccattcggattcctgtccatatggtggaaaccatcaataaattggtt
cgtgaacaacgcaatcttttgcaagaattgggacaagatccaacacctgaacaaattgct
gaacgcatggatatgacgccagacaaagtgcgcgaaatcttgaagattgcccaagaaccc
gtttctcttgaaaccccaatcggtgaagaggacgatagccatttgggcgatttcatcgaa
gacgaagtgattgaaaatcctgtagactataccactcgtgtggttctacgtgaacaatta
gacgaagtcctcgataccctgacagaccgtgaagaaaatgttttgcgccttcgttttggt
ctcgatgatggaaaaatgcggactttggaagatgtggggaaggtcttcaacgtgacccgt
gaacggattcgtcagatcgaagccaaagcccttcgcaaactccgccacccaagcagaagc
aaaccattgcgtgactttattgaggattaa
DBGET
integrated database retrieval system
