Streptococcus parasanguinis ATCC 15912: HMPREF0833_11259
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Entry
HMPREF0833_11259 CDS
T01545
Symbol
rnjA
Name
(GenBank) ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scp
Streptococcus parasanguinis ATCC 15912
Pathway
scp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0833_11259 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scp03019
]
HMPREF0833_11259 (rnjA)
Messenger RNA biogenesis [BR:
scp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF0833_11259 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
Permuted_GreAB-C
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AEH56290
UniProt:
F8DKD3
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All DBs
Position
1310524..1312206
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AA seq
560 aa
AA seq
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MAYTLKPEEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYSY
IVDNIDRVKAVLITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRDAKL
YEINQNTELQFKNLKATFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPADLH
RMAALGEEGVLCLLSDSTNAEIPTFTNSEKVVGQSIMKIIEGIHGRIIFASFASNIFRLQ
QAAEAAVKTGRKIVVFGRSMEKAIVNGIELGYIKVPAGTIIEPNEIKDYAANEILIMCTG
SQGEPMAALSRIANGTHRQVQLQPGDTVIFSSSPIPGNTTSVNKLINTISEAGVDVIHGK
INNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMQKIHAGLARDCGVEKDNIFIMSNG
DVLALTANSARIAGSFNAQDIYVDGNRIGEIGAAVLRDRRDLSEDGVVLAVATVDFKSKM
ILAGPDILSRGFIYMRESGDLIRESQRILFNAIRIALKNKDANIQTVNGAIVNALRPFLY
ESTEREPIIIPMILTPDDEN
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcttataccttaaaacctgaagaagttggtgtatttgccattggtggacttggagaa
atcggaaaaaatacctacgggatcgaataccaagatgaaatcatcattgtcgatgccggg
atcaaatttccagaagatgacctccttgggatcgactatgtaatcccagattactcttat
atcgttgacaatatcgatcgagtcaaagcggtcctcattacccacggacacgaagaccac
atcggtgggattcctttccttttgaagcaagccaatgtccctatctacgctggacctttg
gcgcttgccttgatccgtggaaaattagaagagcatggtcttcttcgtgatgccaaactc
tacgaaatcaaccaaaacactgagcttcaatttaaaaatcttaaagcaaccttcttccgt
acgactcactcgattccagaacctttagggattgtgattcacacccctcaaggaaagatt
gtctgtaccggagacttcaaatttgacttcacacctgttggagaaccggctgacctccat
cgtatggcggcccttggggaagaaggcgttctctgtctgctttcagactcaaccaacgcg
gaaatcccaacctttactaactctgaaaaagtggttggccaatccatcatgaagatcatc
gaaggcatccatgggcgcatcatttttgcctcctttgcttcgaatatcttccgtctccaa
caagctgctgaggccgctgttaagaccggtcgtaagatcgtcgtctttggacgctcgatg
gaaaaagccatcgtcaatggaatcgagcttggctacatcaaggtccctgctggaaccatt
atcgagccaaatgagatcaaagactatgcggccaatgaaatcctgatcatgtgtacagga
agccaaggagagccaatggcagccctctctcggattgccaacggaacgcaccgccaagtg
caactccaaccaggagatactgtgatcttctcttctagtccaattcctggaaatacaacc
agtgtgaataaattgatcaatacgatttctgaagcgggggtcgatgtcattcacgggaag
atcaacaatatccatacttctggacacggggggcaacaagaacaaaaacttatgctccgc
ttgatcaaaccaaaatacttcatgcctgtccatggtgaataccggatgcagaagatccac
gcaggacttgcgcgtgattgcggagtggaaaaagacaatatcttcatcatgagtaatggt
gatgtcctcgctctaacagccaactctgctcgaatcgcaggaagcttcaatgctcaagat
atctatgtcgatggaaaccgcatcggtgaaatcggggctgctgtccttcgtgaccggaga
gacctttccgaagacggtgtcgtgcttgctgttgcgactgttgacttcaaatcgaagatg
atcctggctggaccagacatcttgagccgtggttttatctacatgcgtgaatcaggagat
ctgatccgtgaaagccagcgcatcctcttcaatgcaattcgcatcgccttgaagaacaaa
gatgccaatatccaaaccgtcaatggtgcgattgtcaatgctcttcgtccattcctatac
gaaagcacggaacgtgaacccatcattattccaatgattctcacaccagatgacgaaaat
taa
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