Streptococcus parasanguinis ATCC 15912: HMPREF0833_11311
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Entry
HMPREF0833_11311 CDS
T01545
Symbol
rnjB
Name
(GenBank) ribonuclease J 2
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scp
Streptococcus parasanguinis ATCC 15912
Pathway
scp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0833_11311 (rnjB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scp03019
]
HMPREF0833_11311 (rnjB)
Messenger RNA biogenesis [BR:
scp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF0833_11311 (rnjB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
BHD_3
SUFBD_core
Motif
Other DBs
NCBI-ProteinID:
AEH56342
UniProt:
F8DKH3
LinkDB
All DBs
Position
complement(1378545..1380206)
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AA seq
553 aa
AA seq
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MSSIKLVTLGGVRENGKNLYVAEVNDSIFVLDAGLKYPENEQLGVDVVIPNMDYLFENKD
RIAGVFLTHGHADAIGALPYLLAEAKVPVFGTELTIELAKLFVKGNDSVKKFNDFHVIDQ
NSEIDFGDAVVSFFQTTHSIPESIGIVIGTSEGNIVYTGDFKFDQTASESYATDFARLAE
IGREGVLALLSDSANADSKIQVASEQEVGDEILDTIADWDGRVIVAAVASNLSRIQQVFD
AAAETGRRVVLTGFDVENIVRTAIRLNKLSLANEKLLIKPKEMSRFEDHELIILETGRMG
EPINGLRKMSIGRHRYVEIKDGDLVYIVTTPSIAKEAVVARVENMVYQAGGIVKLITSSL
RVSGHGNARDLQLMINLLRPKYLFPIQGEYRELDAHARVAMEVGILPENIFIPKRGTVME
YEKGDFVPAGSVSAGDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVAITVNRKEKKIISK
ARVHTRGFVYVKKSRDILRESCELVNQSVEGYLAQDSFDWGELKGLVRDNLSKFLFEQTK
RRPAILPVVMEVK
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
gtgagtagtattaaattagtcactcttggcggtgttcgagaaaatgggaaaaatctctac
gttgccgaagtgaacgattcgatttttgtcttggatgcaggtttgaagtatccagaaaat
gagcaacttggggtggatgtcgtcatccctaatatggactatctatttgaaaataaggac
cgcattgcgggtgttttcttgacccatggtcatgcggatgccattggggccttgccttat
cttttggcggaagcgaaggtccctgtattcgggacagagttgactattgagttggccaaa
ctctttgtgaaaggcaatgacagtgtgaagaaattcaatgacttccatgtcatcgatcaa
aattctgaaattgactttggagatgccgtcgtctccttcttccaaacaactcactccatc
cctgaaagtattgggattgtgattggtacttctgagggcaatatcgtctatacaggagac
tttaaatttgaccaaactgcaagtgagtcgtatgcaactgattttgcccgcctagctgaa
attggacgtgagggtgtccttgcgctcttgagtgattcagccaatgcggatagtaagatt
caagttgctagtgagcaagaagtgggcgatgagatcctggacaccattgcggactgggat
ggtcgtgtcatcgtggcggcggtagccagcaacctctcacggatccagcaggtctttgat
gctgcggctgagactggccgtcgagtggtcttgacagggtttgatgtagaaaacatcgtc
cggacagctattcgcttgaacaaattgtctcttgccaacgaaaaactcttgatcaagcca
aaagaaatgagccgttttgaagatcatgaattgatcattttggaaacaggccggatgggt
gagccgatcaacggtttgcgcaagatgtctattggccgtcaccgctatgtggaaatcaaa
gatggggacttggtctacatcgttacaacaccatctattgctaaagaagctgtggtggct
cgtgtggaaaacatggtctaccaagcaggtggaattgtcaaattgatcacgtcaagcttg
cgtgtatctggtcacggaaacgcacgggacttgcagttgatgatcaaccttcttcgtcct
aaatatctcttcccgatccaaggggaataccgcgaattggatgcccatgcgcgggtagcg
atggaagtcggtatcttgcctgaaaatatctttattccaaaacgcggaactgtgatggag
tacgaaaagggggactttgtccctgctggtagcgtctcagctggagatgtcatgatcgat
gggaatgccattggtgatgtggggaatattgtccttcgtgaccgcaaggtcttgtcagaa
gacgggatctttatcgtggcgatcacagtgaatcgcaaagagaagaaaattatttccaaa
gcgcgcgtgcacacccgtggttttgtctatgttaagaagagtcgggatattcttcgtgaa
agttgcgaattggtcaaccaaagcgttgaaggctatttggcacaagacagctttgactgg
ggtgagttaaaaggtttggtacgcgacaacttgtctaagttcttgtttgaacaaaccaaa
cgccgtccagccatcctaccagttgtgatggaagtgaaataa
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