Streptococcus parasanguinis ATCC 15912: HMPREF0833_11649
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Entry
HMPREF0833_11649 CDS
T01545
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
scp
Streptococcus parasanguinis ATCC 15912
Pathway
scp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0833_11649 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scp03021
]
HMPREF0833_11649 (rpoC)
03400 DNA repair and recombination proteins [BR:
scp03400
]
HMPREF0833_11649 (rpoC)
Enzymes [BR:
scp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0833_11649 (rpoC)
Transcription machinery [BR:
scp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0833_11649 (rpoC)
DNA repair and recombination proteins [BR:
scp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0833_11649 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AEH56680
UniProt:
F8DGR8
LinkDB
All DBs
Position
1772940..1776593
Genome browser
AA seq
1217 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGPGSFVAKMGAEAIQDLL
KQVDLEAEIALLKEELKTATGQKRVKAVRRLDVLDAFYKSGNKPEWMVLNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDIVQNVKAAKRLVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEAGREGEGMVFKDRDEAVMAFRNGYVHLHTRVGI
ATDSLDKPWTEAQQHKILLTTVGKILFNDIMPAELPYLQEPNNTNLTEGVPAKYFLEPGQ
DVKAAIEKLELNVPFKKKNLGNIIAEIFKRFRTTETSAFLDRLKDLGYHHSTLAGLTVGI
ADIPVVEDKAEIIEESHKRVEQITKQFRRGLITDDERYNAVTAEWRAAREKLEKRLVDNQ
DPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVIRAITDGKEMIEPLE
ERLTGRYTKKSVKHPETGEVIVGPDTLISEDLAREIVNAGVEEVTIRSVFTCNTRHGVCR
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRVQEI
FEARNPKGEAVITEVKGEVTAIEEDASTRTKKVFVSGATGEGEYVVPYTARMKVEVGDQV
SRGEALTEGSIQPKRLLAVRDVLSVETYLLAEVQKVYRSQGVEIGDKHIEVMVRQMIRKV
RVMDPGDTDLLMGTLMDITDFTDANKDVLISGGVPATARPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPQAINEIEIIEEVP
LIDGTVDEVQTAEVVEE
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
gtggttgatgtaaatcgttttaaaagtatgcaaatcaccctagcttctccaagcaaggtc
cgttcatggtcttatggagaggtcaagaaacctgaaacaatcaactaccgtacattgaaa
ccagaacgtgaaggtctctttgatgaagtcatctttggacctacaaaagactgggaatgt
gcgtgtgggaaatacaaacggatccgttacaaagggatcgtttgtgaccgctgtggggtt
gaagtaacacgtgcgaaagttcgtcgtgaacgcatggggcacatcgagttgaaagcacct
gtatcacacatctggtacttcaaaggaatcccttctcgtatgggattgactttggatatg
agtcctcgtgcccttgaagaagtcatctacttcgcagcttacgtggtgatcgatccaaaa
gatactccacttgagcacaaatccattatgacggaacgcgaataccgtgaacgcttgcgt
gaatacggaccaggttcctttgtagctaagatgggtgcagaagcgatccaagacctcttg
aaacaagtggatctggaagctgaaattgctctcttgaaagaagaattgaagactgcaact
ggtcaaaaacgtgtgaaggctgtgcgtcgtttggatgtcttggatgccttctacaaatct
ggcaacaagccagaatggatggtcctcaacatccttccggttattccaccagatcttcgt
ccgatggtccaattggatggtggccgttttgctgcctctgacttgaatgacctttaccgt
cgtgtgattaaccggaacaaccgtttggcgcgtttgcttgagttgaatgcccctggtatc
atcgtgcagaacgaaaaacggatgctccaagaagctgttgatgctttgatcgacaacggt
cgtcgtggtcgtccgatcacaggaccaggtagccgtccactgaaatcattgagccacatg
ctcaaagggaaacaaggacgcttccgtcaaaacttgctcggtaaacgggtggacttctca
ggacgttccgttatcgccgttggtccaactcttaagatgtaccaatgtggtgtgccacgt
gaaatggccatcgagctctttaaaccattcgtgatgcgtgaaatcgttgcgcgtgatatc
gtacaaaacgttaaagctgcaaaacgattggtcgaacgtggagatgaacgcatctgggat
atcttggaagaagtgatcaaagaacacccagttctcttgaaccgcgcaccgacccttcac
cgtttggggatccaagcctttgagccagtcttgattgacgggaaagctcttcgcttgcac
ccacttgtctgtgaagcctacaatgctgactttgacggtgaccaaatggccatccacgta
ccactttcagaagaagcccaagcagaagctcgtatcttgatgttggctgctgagcacatc
ttgaatccgaaagacgggaaaccagtcgttaccccatctcaggacatggttttggggaac
tactacctcactatggaagaagctggtcgtgaaggggaaggcatggtcttcaaagatcgt
gatgaagcagtgatggcctttcgtaatggctatgttcatttgcatacacgtgtcggaatt
gcgaccgatagcttggacaaaccatggacagaagcgcaacaacacaagattctcttgaca
actgttggtaagatcctctttaacgatatcatgcctgcagagcttccataccttcaagag
ccaaacaataccaacttgacagaaggcgttccagctaagtacttcttggagcctggtcaa
gatgtgaaagcggcgattgagaaattggaattgaacgttccattcaagaagaaaaatctt
ggaaatatcattgcggaaatcttcaaacgcttccgtacaaccgaaacttctgctttcttg
gaccgcttgaaagacttgggttaccatcattcaacccttgctggtttgacagtggggatt
gccgatattccggtcgttgaagataaggcagaaattattgaagaatctcacaaacgtgtg
gaacaaatcaccaaacaattccgtcgtggtttgatcacggatgacgaacgctacaatgcc
gttacagctgaatggcgtgcagctcgtgagaaattggaaaaacgcttggtggataaccaa
gatccgaagaacccaatcgttatgatgatggactctggagcccgtggtaacatctcaaac
ttctcgcaacttgccggtatgcgtggtttgatggccgctccaaacggacggatcatggaa
ttgccaatcctttcaaacttccgcgaaggtttgtctgtattggaaatgttcttctcaact
cacggtgcccgtaaagggatgaccgatacggcccttaagacagccgactcaggttacttg
actcgtcgtttggttgacgttgcccaagacgtcattatccgtgaagatgactgtggaaca
gaccgtggacttgtgatccgtgccattactgatggtaaggaaatgatcgagccattggaa
gaacgcttgacaggtcgttatacgaagaaatctgttaaacaccctgaaacaggtgaagtg
atcgttggtccagatactttgatttcagaagacttagcacgtgaaattgtcaatgctggt
gttgaagaagtcactattcgctctgtctttacatgtaacacccgccatggtgtctgccgt
cactgttatggtatcaacttggcgactggtgatgcggttgaagtgggtgaagcagtcgga
accatcgctgcccaatctatcggggaacctggtacacagttgaccatgcgtaccttccac
acgggtggggttgcctcaaataccgatatcactcagggtcttcctcgtgtccaagaaatc
tttgaagcccgcaatccaaaaggggaagcggtcatcactgaggtcaaaggggaagtcaca
gcgatcgaagaagatgcttctacacgtaccaagaaagtctttgttagtggagcaactggt
gagggtgaatacgttgtcccttacactgcccgcatgaaagtcgaagtgggagatcaagtc
tctcgtggtgaggctcttacggaaggatctatccaaccaaaacgtctccttgccgttcgt
gatgtcttgtctgttgaaacttaccttcttgcggaagtacaaaaagtataccgtagccaa
ggggtagaaatcggcgacaaacacatcgaggtaatggttcgtcaaatgatccgtaaagta
cgtgtcatggatccaggagatacagaccttctcatgggtactctcatggatattacagac
tttacagatgctaataaggatgtccttatctctggtggagttcctgcgactgcgcgtcca
gttcttatgggaatcaccaaagcctcgcttgaaaccaatagtttcttgtcagcggcttcc
ttccaggaaacaactcgtgttcttactgacgcggcgatccgcggtaagaaagaccatctc
cttgggctcaaggaaaatgttatcatcggtaagattattcctgctggtacaggtatggcc
cgttaccgtaacttggagccacaagcgattaatgaaattgaaatcatcgaagaagtgcca
ttaatagatggaacagtcgatgaagttcaaacagctgaagtcgtagaagaataa
DBGET
integrated database retrieval system
