Spiroplasma culicicola: SCULI_v1c00510
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Entry
SCULI_v1c00510 CDS
T03047
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
scq
Spiroplasma culicicola
Pathway
scq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCULI_v1c00510 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scq03021
]
SCULI_v1c00510 (rpoC)
03400 DNA repair and recombination proteins [BR:
scq03400
]
SCULI_v1c00510 (rpoC)
Enzymes [BR:
scq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCULI_v1c00510 (rpoC)
Transcription machinery [BR:
scq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCULI_v1c00510 (rpoC)
DNA repair and recombination proteins [BR:
scq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCULI_v1c00510 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AHI52392
UniProt:
W6A5X4
LinkDB
All DBs
Position
50011..53769
Genome browser
AA seq
1252 aa
AA seq
DB search
MANKRMIKIELASPDVIRSWSRGEVTKPETINYKTLKTEKEGLFDERIFGPTKNYECSCG
KYKKVKNKGKVCERCGVEITESIVRRERMGHIELEEPVTHIWMLKVAPSRIASILDLKTK
EVEEVVYFVSHIVLDPGNSKHLKKGMVLDLGNAKASLKTREKLLKTLEDIKEELEPDSFQ
WKRADNLIAQLKSSSTPFSMDEAATFIARNINAKFGIGASAIEELLQNINLDAEIEKIKE
DLKERKGSTEQNKMMKRLEVLDSLKKSNSKPEWMILRVIPVIPPDIRPIIQLDGGRFTTS
EINDLYRRIIIRNERLKKVKSMGAPSIIVNNEKRMLQEAVDALLDNERKPRPVTGKDKRA
LKSLTSILKGKQGRFRQNLLGKRVDYSGRSVIAIGPDLKMYQAGIPRDMAITLFKPFVIK
RLQEKELAENVKVAEKMILSNDAKVWDILEEVIKDRPVLLNRAPTLHRLGIQAFEPKLVK
GKAIRLHPLVTTAFNADFDGDQMAVHLPISDEAVAEARALMLGSKAILGPKDGKPIVTPT
QDMILGNYYITTEEKETETNGIKGQATLFASYQEVKIAYETQSVSLNAIVAMPVSELKNK
MFAEEDQDKYLITTVGKIFFNQMFVEQFPWIVNHNILNAETEIKNFLVDSNTDLNAYIEN
EYTIQQPIKKKELSLIIERYFKVYGAQKTAQMLDNMKDLGFKFSSKSGTTISAADVVAYT
QKFDDFKIADEKVNQITEFYNMGMLTKAEKKRRVIAIWSSVKDKIQSKLEGVLKQDPKNP
VFVMADSGARGNVSNFTQLVGMRGLMNDPKGDIKEIPIKSSFREGLTVSEYFISTHGARK
GMADVALKTADSGYLTRRLVDISQEIIVTEEDCGSKNGFNVYSIIETKHNNIIVPLKDRL
TGRYTFQEVVDKNNKVIAQANTLITAELADAIVGAGVEDVLIRTVLTCNTNRGVCRKCYG
INLATGHEVALGEPVGVVAAQSIGEPGTQLTMRTFHTGGVAGGADITQGLPRIKELLDVT
TPKGSIAIISQIDGTVKEVKEEDGILSILVASDQDERKYKSQYGAIARVQVGDFVKRGKK
LTEGAINIKELLEVAKIEDVQNYILKEVQKVYRLQGIEISDKYIEIIVKQMLNKVKIIDS
GETNLLPGEIISSRTYKNEVLTSITAGKKPPLAKHVIFGIKKAPLESDSWLSSASFQDTA
RVLVKAVIKGKVDKLEGLKENIMLGNLIPAGTGLTGSADIIQKGKETYESEY
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atggcaaataaaagaatgattaaaattgaactagcttctcctgatgtaatcagaagctga
tctcgtggtgaagttactaaacctgagactattaactataaaactttaaaaactgaaaaa
gaaggtctatttgatgaaagaatctttggaccaactaaaaactacgaatgtagttgtgga
aaatataaaaaagtaaaaaacaaaggaaaagtttgtgaacgttgtggagttgaaattact
gaatcaatcgtgagacgtgaaagaatgggtcacattgaattagaagaacctgtaactcac
atttgaatgttaaaagttgcaccaagtagaattgcttcaattttagatttaaaaactaaa
gaagtagaagaagtagtttactttgttagtcacattgttttagatccaggaaattcaaaa
caccttaaaaaaggaatggttttagatttaggaaatgctaaagcaagtttaaaaacaaga
gaaaaattattaaaaactcttgaagatattaaagaggaattagaaccagattcattccaa
tgaaaaagagctgacaacttaattgctcagttaaaatcttcttcaactccattctcaatg
gatgaagccgcaacttttattgcaagaaacattaatgcaaaatttggaattggtgcaagt
gcaattgaagaattattacaaaacattaatttagatgcagaaattgaaaaaattaaagaa
gatttaaaagagcgtaaaggttcaacagaacaaaataaaatgatgaaacgtttagaagtt
ttagattcattaaaaaaatctaattctaaacctgaatgaatgatcttacgtgtaattcca
gttattcctccagacattagaccaattattcaattggatggtggaagatttacaactagt
gaaattaacgacttatacagaagaattattattagaaatgagcgtctaaaaaaagttaaa
tcaatgggtgctccaagtattattgttaacaatgaaaaacgtatgcttcaagaagcagtt
gatgctttattggacaacgaacgtaaaccaagaccagttactggtaaagataaacgtgca
ttaaaatcattaacttcaatcttaaaaggaaaacaaggtagatttagacaaaacttactt
ggaaaacgtgttgactattcaggacgttcagttattgcaattggtccagacttaaaaatg
tatcaagctggaattccaagagacatggcaattacattgtttaaaccatttgtaatcaaa
agattacaagaaaaagaacttgcagaaaacgtaaaagttgcagaaaaaatgattttatca
aatgatgcaaaagtttgagatattttagaagaagtaattaaagatagaccagttttatta
aaccgtgctccaactcttcaccgtttaggaattcaagcatttgaacctaaattggttaaa
ggaaaagcaattcgtttacacccattagtaacaacagcatttaacgccgactttgacggg
gaccaaatggctgttcacttaccgattagtgatgaagcagttgctgaagctagagcttta
atgttaggaagtaaagcaattttgggaccaaaagatggtaaaccaattgttactccaact
caagatatgattcttggaaactactacattactactgaagaaaaagaaactgaaactaat
ggtatcaaaggtcaagcaacattatttgcaagttatcaagaagttaaaattgcatatgaa
acacaatctgtttcattaaatgcaattgtggcaatgcctgtaagtgaattaaaaaacaaa
atgtttgcagaagaagatcaagataaatacttgattacaactgttggaaaaatctttttc
aaccaaatgtttgttgaacaattcccatgaattgttaaccacaatatcttaaatgcagaa
acagaaattaaaaacttcttagttgattcaaatacagacttaaatgcttatattgaaaat
gaatatacaattcaacaaccaattaagaaaaaagaactttcattaattattgaaagatac
tttaaagtatatggtgcacaaaaaacagcacaaatgttagataacatgaaggatttagga
tttaaattctcttcaaaatctggaacaacaattagtgctgctgacgttgttgcctatact
caaaaatttgatgatttcaaaattgcagatgaaaaagttaaccaaattactgaattctat
aacatgggaatgcttacaaaagctgagaaaaaacgtcgtgttattgcaatttgatcatca
gttaaagataaaatccaatcaaaacttgaaggtgttctaaaacaagatccaaaaaaccct
gtatttgttatggccgattcaggagctcgtggtaacgtatctaactttacacagcttgta
ggtatgaggggtctgatgaatgaccctaaaggggacattaaagaaattccaattaaatca
agttttagagaaggattaactgtgtctgaatactttatttctactcacggtgccagaaaa
gggatggccgacgttgccttaaaaactgccgattcagggtacttaactcgtagacttgta
gatatttcacaagaaattattgtaacagaagaagattgtggatctaaaaatggatttaac
gtttattcaattattgaaacaaaacacaataacattattgtgccattaaaagatagatta
acaggaagatacacattccaagaagttgttgataaaaacaacaaagtgattgcacaagca
aatactttaattactgcagaacttgctgatgcaattgttggtgctggagttgaagacgtt
ctaattagaacagtattaacttgcaacacaaatcgtggagtatgtagaaaatgttatgga
atcaacttagcaacaggacatgaagttgcactgggtgaaccagttggagttgtggctgct
caatcaattggagagccaggaactcagcttacaatgcgtactttccatactggaggggtt
gctgggggagcagatattactcaaggattacctcgtattaaggaattacttgacgtaact
actcctaaaggttcaattgcaattatttcacaaattgatggaactgtaaaagaagttaaa
gaagaagatggaatcttaagtattcttgttgcatctgaccaagacgaaagaaaatacaaa
tcacaatatggagcgattgctcgtgttcaagttggagactttgtaaaacgtggtaaaaaa
cttactgaaggtgcaattaacattaaagaactacttgaagttgcaaaaattgaagatgta
caaaactacatcttaaaagaagttcaaaaagtttatcgtttacaagggattgaaatttct
gataaatatattgaaattattgttaaacaaatgttaaacaaagttaaaattattgattca
ggagaaacaaacttgttaccaggagaaattatttcttcaagaacttacaaaaatgaagta
ttgacttcaattactgctggtaaaaaaccaccattggcaaaacatgttatctttggtatt
aaaaaagcaccacttgaatctgattcatgattatcaagtgcttcattccaagatacagca
cgtgttcttgtaaaagcagttattaaaggaaaagttgataaactagaaggattaaaagaa
aacattatgttaggaaacttaatcccagcaggaacaggtttaactggatctgcagatatc
attcaaaaaggaaaagaaacttacgaatctgagtactag
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