Spiroplasma culicicola: SCULI_v1c07270
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Entry
SCULI_v1c07270 CDS
T03047
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
scq
Spiroplasma culicicola
Brite
KEGG Orthology (KO) [BR:
scq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SCULI_v1c07270 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scq03021
]
SCULI_v1c07270 (rpoD)
Transcription machinery [BR:
scq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SCULI_v1c07270 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
U3_snoRNA_assoc
HTH_19
2OG-FeII_Oxy_6
Motif
Other DBs
NCBI-ProteinID:
AHI53068
UniProt:
W6A7E7
LinkDB
All DBs
Position
complement(804673..806094)
Genome browser
AA seq
473 aa
AA seq
DB search
MAINIKKFETMEEFKEYLFNYLEKNDNEISQEEIQEVIFKKFRDVEDDEIGELFQELANK
NVTFTDELLDEEDLESLAADDDEEESDDEEDGESASELAEGFAKRKKAQKDLKKANENNG
PVKYRVGGISNETKIQDIIKSYFNQIGSSKILTKDEEVEYAKMLEDSDPDIAKEGRDKLI
TSNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFDYTKGFKFSTYATWWIRQAIT
RAIADQARTIRIPVHMVETINKLARIERQLTQELGREPTSKEVAKKFGKGITPQKVIEIK
KLSIEPVSLEKPFGDEDDTHFGDFVEDKDISSPDEYAEKEALREVIDDVFAEILQPREEK
VIRMRFGILPTKLRTLVRLAEDCEDDTYQELRDTISKLDIHYDTSIEKIQRYANPMIQLH
LSKYDSPKTLEEVGKELKVTRERIRQIEAKTIRKFKPSASNPKAKVLRDFFKG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcaattaatattaaaaaatttgaaacaatggaagaatttaaggaatatctttttaac
tatttagaaaagaatgacaatgaaatttcacaagaagaaattcaagaagttatttttaaa
aagtttagagatgttgaagatgatgaaataggagaactatttcaagagttagcaaataaa
aatgttacttttacagatgaattattagatgaagaagacttagaaagtttagcagcagat
gacgatgaagaagaatcagatgatgaagaagatggtgaatctgcaagtgaattagcagaa
ggatttgctaagagaaaaaaagcacaaaaagatttaaagaaagcaaatgaaaataatgga
cctgttaaatacagagttgggggaattagtaatgaaactaagatccaagacattattaaa
tcttactttaatcaaattggttcatcaaaaatcttaacaaaagatgaagaagttgaatat
gcaaaaatgttagaagattcagatcctgacattgcaaaagaaggaagagataaattaatt
acttctaacttaaaacttgtaatttctgttgcaagaaaacatttaaatcgtggattagat
tttgcagatttaatcgaagagggaaatattggtttaatgaaagctgttgataaatttgac
tatactaaagggtttaaattctcaacatatgcaacatgatgaattcgtcaagcaattaca
agagcgattgcagatcaagcaagaacaattcgtattccagttcatatggttgaaactatt
aacaaattggcaagaattgaaagacaattaactcaagaattaggaagagaacctacttca
aaagaagtggccaaaaaatttggtaaaggaattacacctcaaaaagttattgaaatcaaa
aaattatcaattgaaccagttagtttagaaaaaccatttggagatgaagatgacactcac
tttggagactttgttgaggataaagatatttcatctccagatgaatatgcagaaaaagaa
gcattaagagaagtaattgatgatgtttttgcagaaatcttacaaccaagagaagaaaaa
gttattagaatgcgttttggaattttacctacaaaattaagaactttagttcgtcttgca
gaagattgcgaagatgatacttatcaagaattaagagatactatttcaaaattagatatt
cattatgatacatcaattgaaaaaattcaaagatatgcaaatccaatgattcaattgcat
ttatcaaaatatgactcaccaaaaactttagaagaagttggaaaagaattaaaagttaca
cgtgaaagaattagacaaattgaagcaaaaacaattcgtaaattcaaaccgtcagcttca
aatccaaaagctaaagttttaagagatttctttaaaggttaa
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