Spiroplasma chrysopicola: SCHRY_v1c00470
Help
Entry
SCHRY_v1c00470 CDS
T02676
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
scr
Spiroplasma chrysopicola
Pathway
scr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCHRY_v1c00470 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scr03021
]
SCHRY_v1c00470 (rpoB)
03400 DNA repair and recombination proteins [BR:
scr03400
]
SCHRY_v1c00470 (rpoB)
Enzymes [BR:
scr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCHRY_v1c00470 (rpoB)
Transcription machinery [BR:
scr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCHRY_v1c00470 (rpoB)
DNA repair and recombination proteins [BR:
scr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCHRY_v1c00470 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-GeneID:
16152139
NCBI-ProteinID:
AGM24634
UniProt:
R4U9W5
LinkDB
All DBs
Position
58532..62410
Genome browser
AA seq
1292 aa
AA seq
DB search
MALKEKEFGHYAKRIDYTKVSGNLELPNLIEIQTETYDWFKQTGISEVFNEVFPIVGHEG
NIILEMLDWEFKQPRRTIPQAKEESKIFEAPIYSNLKLTINSKDIEIETGIVKGEPELIK
AWIEERIGHMITILKKSADVVYYDIHTGDEEATCTVTIKDRQPEKLIVDIMIEKTGEVFF
GDFPLMTGKGTFIINGSEKVVVSQLVRSPGAYYKIDLNRKNGENVYYVDLIPSRGTWLEF
ESDNKKIKTEKEERFKNVFYVKIDKSRKVSVANLFTALGLTKEAVFDIFGDSKLVQNTYE
LENYTGDIAYDQSIAVQELYKKIRSGETATPDGATKYLFGLLFDKRKYDLTKAGRFKLIQ
KLSVENRIYNKVLAADIKDTNGKVVFSEGTLMDKENVIKLKGLLRTGACLETITFNDEII
CSDKIQKIQIYTDNEARNKITNIIGIDPNATDEYITVPDIVATFSYLLNLTEGIGEVDDI
DHLGNRRVRTIGELLQNQFRIGLLRIEKNVKEKMSTSSNLFKMKPSNIINNKPLSAIIGE
FFNLSQLSQFMDQTNPLAELTNKRRLTALGPGGLSRERAGLEVRDVHYSHYGRICPIETP
EGPNIGLINNLATYAKINSFGFIETPYRRVVNNKVTAQNDYLTADEEKNYVVAQANIRLS
DRGEILDDQVIARFQGENIIAPRDEVDYVDVSPKQIVSIATSCIPFLENDDANRALMGAN
MQRQAIPLISPSSPYVGTGVEYAAARDSGLAIVSQYDGTVDFVDATKIILKTKEGLKTYF
LDTFVRSNQGTSLTHVPLVKLGQKVEKNQILADGPSIEKGELALGQNVVVAFTTWNGYNY
EDAIIVSERLVSEDVFTSIHIEEYTIERRQTKQGPEEITREIPNISENARKFLDDDGLVI
IGTEVKPGDILVGKVTPKGQTQLSPEDKLLQAIFGEKSKNVKDNSLRVPNGGEGIIQAIK
RFPREKYELAADVLEVIKVYIVQKRKIQEGDKMAGRHGNKGVISKILPLEDMPHLEDGTP
VDIMLNPLGVPSRMNIGQVLEIHLGMAAKKLGQKVATPVFDGMTNDELIEIMNKANMKNF
GKEVLVDGRTGEKFDNPVSVGVMYMLKLSHMVDDKLHARNVGPYSLITQQPLGGKAQNGG
QRFGEMEVWALEAYGAAHTLREILTIKSDDIKGRTRAYEAIVKDKKIPEPGIPESFNVLT
REIQGLGFNIHMIDEEGNAKNINSYDETDYVDEDLLTNTVDELEDEFDIDSFILNPNKNN
FNEDDYSNGDIDEADLLGDNDASDDELENESN
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atggcgctaaaagaaaaagaatttggacattatgcgaaaagaattgattatacaaaagta
agtgggaacctagaattaccaaacctgattgaaattcaaacagaaacttatgattgattt
aaacaaacagggattagtgaagtttttaatgaagtatttccaattgttggccatgaaggt
aatattattttagaaatgttggattgggagtttaagcaaccaagaagaacaattccacaa
gcaaaagaagagtcaaaaatatttgaggctccaatttattcaaatttaaaattaactatt
aattcaaaagatattgaaattgaaactggaattgttaagggagaaccagagttaattaaa
gcttgaattgaagaacgcattgggcatatgattacaattttaaaaaaatcagctgatgtt
gtttactatgatattcataccggtgacgaagaggcaacttgcaccgtaacaattaaagat
cgtcaaccagaaaaattaattgttgacattatgattgaaaagacaggagaggtctttttt
ggtgattttccattaatgacagggaaaggaacttttattattaatggttcagaaaaagtt
gttgtttcacaactagttcgttcaccaggagcatattataaaattgatttaaaccgtaaa
aacggggaaaatgtttactatgttgatttaattccatcacgtgggacatgattagaattt
gaatcagataacaaaaaaattaaaacagaaaaagaagaacgctttaaaaatgttttctat
gtcaaaattgataaatcaagaaaagtttcagttgctaacttatttacagccttaggttta
acaaaagaagctgtttttgatatttttggggatagtaaattagttcaaaatacttatgaa
ttagaaaactatactggtgatattgcctatgatcaaagtattgcggtacaagaattatac
aaaaaaattcgttcaggagaaacagcaacaccagatggagcaacaaaatatctttttggg
ttattatttgataaacgtaaatatgacttaacaaaagctgggcgttttaaattaattcaa
aaactatcagtggaaaatcgaatttataataaagtattagccgctgatattaaggatact
aacggaaaagttgtttttagtgaaggaaccttaatggataaagaaaacgtgattaaatta
aaaggattgttacgaacaggagcatgtttagaaacaattacttttaatgatgaaattatt
tgtagtgataaaatccaaaaaatccaaatttacactgataatgaagctcgtaataaaatc
acaaatattattggaattgatccaaacgcaactgatgaatatattactgttcctgatatt
gtggcaacattttcatatttattaaatctaacagaaggaatcggagaagttgatgatatt
gaccatttaggaaaccgtcgtgttcgaacaattggggaattattacaaaaccaattccga
attgggttattacgaattgaaaaaaatgttaaagaaaaaatgtcaacatcttcaaactta
tttaagatgaaaccatcaaacattattaataataaaccattatcagcgattattggtgag
tttttcaacttgtcacagttatcacaatttatggatcagacaaacccattagctgagtta
acaaacaaacgtcgtttaacagctttaggaccagggggattatcaagagaacgtgcggga
ttagaagtgcgggatgtccactactcacactacggacgaatttgtccaattgaaacgcca
gaagggccaaatattgggttaattaacaacttagctacttatgcgaaaattaattcattt
gggtttattgaaacaccataccgaagagtagttaataataaagttacagcccaaaatgat
tatttaacagctgatgaagaaaaaaactatgttgtggcgcaagctaacatccgtttaagc
gatagaggcgaaatcttagatgatcaagtaattgctcgcttccaaggggaaaatattatt
gctccgcgtgatgaagttgactatgttgacgtttcaccaaagcaaattgtttcaatcgca
acaagttgtattccatttttagaaaatgacgatgctaaccgtgccttaatgggggcgaac
atgcaacgtcaggccatcccattaatttcaccaagttcaccatatgttggaacaggggtt
gaatatgctgctgctcgtgactcagggttagcaattgtttcacaatatgatggaactgtt
gactttgttgatgcgacaaaaattattttaaaaacaaaagagggtctaaaaacatatttc
ttagatacttttgtgcgtagtaaccaaggaacatcattgacacatgttccattagtaaaa
cttgggcaaaaagttgaaaaaaatcaaattttagctgatggaccatcaattgaaaaaggg
gaattggcattaggacaaaatgttgttgttgcctttacaacttgaaatggttataactat
gaggatgcgattattgtttcagaacgattagtgtcagaagatgtctttacttcaattcat
attgaagaatatacaattgaacgtcgtcaaacaaaacaaggaccagaagaaattactcgt
gaaattccaaatatttcagaaaatgctcgtaaattcttagatgatgatgggttagtaatt
atcggaacagaagttaaaccgggtgatattttagttgggaaagtaacaccaaaaggacaa
acccaattatcaccagaagataaattattacaagcaatttttggggaaaaatcaaaaaat
gttaaagataattcgttacgtgttccgaatggtggggaaggaattattcaagcaattaaa
cgtttcccacgggaaaaatatgaactagcagctgatgtattagaagtaattaaagtttat
attgttcaaaaacgtaaaatccaagaaggagataaaatggcggggcgtcatggtaataaa
ggggttatctcaaaaatcttaccattagaagatatgccacacttagaagacggaacacca
gttgatattatgttaaacccattaggggttccttcacggatgaatattggacaggtgcta
gaaatccacttaggaatggccgctaaaaaattaggacaaaaagttgcaacaccagttttt
gatgggatgacaaatgatgaactaattgaaattatgaacaaagcaaatatgaaaaacttc
gggaaagaagtgttagttgatgggcgaacaggggaaaaatttgataatcctgtttcagtt
ggagtgatgtacatgctgaaattatcacacatggttgatgataaattacatgcacggaac
gttggtccatactcattaattacccaacaaccattaggaggaaaagctcaaaatggggga
caaagatttggggaaatggaagtatgagcgttagaagcttatggagccgcccatacctta
cgggaaatcttaacaattaaatccgatgatattaaaggacgaacaagagcttatgaagca
attgtgaaagataaaaaaattccagaacctggaattccagaatcatttaatgttttaaca
cgtgaaattcaaggattaggatttaatatccatatgattgatgaagaaggaaatgctaaa
aacattaatagttatgatgaaactgattatgttgatgaagatttattaacaaatactgtt
gatgaattagaagatgaatttgatattgatagttttatcttaaatccaaataaaaataat
tttaatgaagatgattatagtaatggtgatattgacgaagcagacttgcttggcgataat
gacgcaagtgatgatgagctagaaaacgaaagtaattag
DBGET
integrated database retrieval system
