Spiroplasma chrysopicola: SCHRY_v1c01210
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Entry
SCHRY_v1c01210 CDS
T02676
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
scr
Spiroplasma chrysopicola
Pathway
scr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCHRY_v1c01210 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scr03400
]
SCHRY_v1c01210 (uvrB)
DNA repair and recombination proteins [BR:
scr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCHRY_v1c01210 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SCHRY_v1c01210 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
P-loop_SecA
AAA_30
AAA_7
AAA_19
AAA_22
AAA_5
Cas3-like_C_2
AAA_16
DUF87
DUF3139
Motif
Other DBs
NCBI-GeneID:
16151601
NCBI-ProteinID:
AGM24708
UniProt:
R4U2M6
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All DBs
Position
138479..140443
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AA seq
654 aa
AA seq
DB search
MFKLVSNYQPAGDQPQAIENLLLGLKNNKKNQVLLGATGTGKTFTMANIIEHYNKPTLVM
AHNKTLAMQLYVELKELFPDNRVEYFVSNFDFYQPEAYIPSRDLYIDKDAKQNMELDMMR
LSAFNALIMRKDVIVVASVAAIYGAQDPNEYKKSFFQLNRGEKIGKKQLTNYLVSSGYVR
NDIEQIPGTFSAKGDVIKIVPGWNIKTFIRIDLFGDEIDDICYIDGLNGDVTQRLSTLTI
FPAQDYITSPERLTKAIELIEKELVVRLEELKGEGKIVETQRLKQRTEYDLDMLRESGIC
SGIENYSRHLDLRQEGEPPYTLIDFFGDDFLTIIDESHMSIPQIRAMYNTDRSRKETLVN
YGFRLKSALDNRPLNFEEFNGKLKNTIYVSATPAEYELELANHQVAEQIIRPTGLLDPTV
EVKQTVGQIDDIIVQIKERRAKNERVFITTLTIRMSEDLTSYLQEQDIKVAYLHSELKTL
ERSQILLDLRKGVYDCIVGVNLIREGIDIPEVSLICILDADKQGFLRNARSLIQTIGRAA
RNAHGHVILYADKMSDAMKQAIKETQRRRAIQEAYNSRYNIEPQTIVKAIRDYTNIRIQD
QKLHKIKNKNSKEYKTAKDGLLNDLRKQMYEASEKLDFEKAAELRDIILEIEAE
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaattagtttccaattatcaaccagctggtgatcaaccacaagcaattgaaaat
ttattattaggactaaaaaataataaaaaaaaccaagtattactgggagccactggaacc
gggaagacttttacaatggctaatattattgaacactataataaaccaacgttggtaatg
gcccataataaaacattagcaatgcagttgtacgttgaattaaaagaattatttcccgat
aatcgtgttgaatattttgtctctaactttgacttttatcaaccagaagcatatattccg
agccgggatttatatattgataaagatgctaaacaaaatatggaattagatatgatgcga
ttaagtgcttttaatgctttaattatgcgtaaagatgttattgttgttgcgtctgttgcg
gcaatttatggggctcaagatcccaatgagtataaaaaatcattttttcaattaaatcgt
ggtgaaaaaattgggaaaaaacaattaacaaattatttggtttcttctggttatgttcgc
aatgatatagaacaaattcctgggacttttagtgcaaaaggagatgtcattaaaattgtt
cctgggtgaaatattaaaacatttattcgtattgatttatttggggatgaaattgatgat
atctgttatattgatggattaaatggggatgtaactcaacgtttatcaaccttaacaatt
tttccggcccaagattatattacttctccagagcgtttaacaaaagcgattgaattaatt
gaaaaagaattggttgttcgcttggaagaattaaagggtgaaggaaaaattgttgaaact
caacgtttaaaacaaagaacagaatatgatttagatatgctccgtgaaagtgggatttgt
tcaggaattgaaaactattcacgccatcttgatttacgccaagaaggggaacccccatat
actttaattgatttttttggcgatgattttttaacgattattgatgaatctcatatgtca
attccccaaattagagcaatgtataatactgatcgtagccggaaagaaacattagttaat
tacggttttcgattaaaaagtgctttagataatcgaccattaaattttgaagaatttaat
ggtaaattaaaaaatacaatttatgtttcagcaacaccagccgagtatgagttagaattg
gcaaatcatcaagtcgctgagcaaattattcgaccaacgggattactagacccaaccgtg
gaagttaaacaaacagttgggcaaattgatgatattattgtacaaattaaagaacgtcgg
gcaaaaaatgaacgggtatttattaccaccttaacaattcgaatgtctgaagatttgaca
agttatctacaagagcaagatattaaagtggcatacttgcatagtgaattaaaaacatta
gagcgtagtcaaattttgctagatttacggaaaggtgtttatgattgtattgttggtgtc
aacttaattcgggaaggaattgatattccggaagtctccttgatttgtattttagatgct
gacaaacaaggatttttgcgtaatgcgcgaagtttaatccaaacaattgggcgtgcggcg
cgaaatgcacatggtcatgttattctttatgctgataaaatgtctgatgcaatgaaacaa
gccattaaagaaacgcaacgtcgtcgggcaattcaagaagcgtataatagtaggtataat
attgaaccccaaacaattgttaaagcaattcgtgattatactaatattcggattcaagat
caaaaattacataaaattaaaaataaaaattcaaaagaatataaaacagcgaaagatggt
ttattgaatgatttacgtaaacaaatgtatgaagctagtgaaaaattagattttgaaaag
gctgcagaattaagagatatcattcttgaaattgaagcggaataa
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