Stanieria cyanosphaera: Sta7437_1473
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Entry
Sta7437_1473 CDS
T02406
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
scs
Stanieria cyanosphaera
Pathway
scs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sta7437_1473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scs03021
]
Sta7437_1473
03400 DNA repair and recombination proteins [BR:
scs03400
]
Sta7437_1473
Enzymes [BR:
scs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sta7437_1473
Transcription machinery [BR:
scs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sta7437_1473
DNA repair and recombination proteins [BR:
scs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sta7437_1473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RNA_pol_Rpb1_3
Biotin_lipoyl
Apocytochr_F_C
RPN1_C
DUF3043
Motif
Other DBs
NCBI-ProteinID:
AFZ35040
UniProt:
K9XQZ2
LinkDB
All DBs
Position
1644694..1648644
Genome browser
AA seq
1316 aa
AA seq
DB search
MKFYNRIVDKGRLKKLIAWAYTNYGSARCANMADQLKEMGFRYATKAGVSISVDDLKVPP
VKQELLEAAETEIRQTEQRYARGEITEVERFQKVIDTWNSTSENLKDEVVRNFKASDPLN
SVYMMAFSGARGNLSQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIISSYGAR
KGLVDTALRTADSGYLTRRLVDVAQDVIVREIDCGTQRAVTLRAMTDGDRVLIPLSDRLM
GRVLARDAMDSKTGEVIAQRNQNIDEDLSLEIGRRAEEVMVRSPLTCEAARSVCQHCYGW
SLAHGKMVDMGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVARQIRAEVVGKVKYSK
GLITRRVRTRHGDEREQVEVAGDILLVPSKGQSFNYPVTPGSYVHVFDGDQVEKGQLLAE
INSAKVQKSTEKAAKDVSSHLAGEVLFADLIPEEKTDRQGNTTRIAQRAGLLWILSGEVY
NLLPGAEPVVKNGDQVQPGDILAQTRLMSASGGVIRMTPGSREIEVITASVLLDQAKVKV
ESDGGREQYIIYTADDQRFLLKTTPGTKVQNHQVVAELIDDRYKTSTGGIIKYAGVEISK
GSRKQGYEISQGGTILWISEESHEVNKDISLLLVEDGQYVEAGTEVVKDVFCQSSGVAEV
IQKNDILREIIIKPGELHLLDDIDPSLDGQLIQPGTEVIPGVTVEELKYGEIVETTEGVA
LLLRPVVEYQVSDEPAAPSQASINHEDGRQIELRSVQRLFFKDGERVQSVEGVSLLSTQL
VLEIDNADEIETATNLSADIELKPDQDDPDSQRLQLVILESLVIRRDTDADPYSGNIQTR
VLVEDGQEIPKGATIARTEIRCKEAGEVRGIRKGGEALRRILVVRNSDRVSYELAAKKSE
CQCREGDLLVAGTELVSGTKLVESGQVVEITETEGNKTTVVLRLARPYRVSAGAILHIDN
GDLVQRGDNLVLLIFERAKTGDIIQGLPRIEELLEARKPKEACVLSRRPGVCQVVYEQDE
TVDVKIIEEDGVVSDYPVGPGQNAMVSDGQKVGPGEPLTDGPANPHEILEVFFNYYLEEK
GCYEASLIGLQQAQKFLVTQVQSVYQSQGIDISDKHIEVIVRQMTSKVRVDDGGDTTMLP
GELVELRQIEQVNEAMSITGGAPAQYTPVLLGITKASLNTDSFISAASFQETTRVLTEAA
IEGKSDWLRGLKENVIIGRLIPAGTGFNTHEEGVGSRGDLDSRSGSMYSYGSEGYDSYRI
GEDNFIQEPLPRRYQDFDDDENVILDDQTARAIISEEDDEPLGGSYYDEFEGFEEE
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgaagttctacaatcgcatcgttgataaaggtcgtctgaaaaagttaattgcttgggct
tatactaattatggttcagcacgctgcgctaatatggcagaccagttaaaagaaatggga
tttcgttatgccactaaagcaggtgtatcaattagtgtcgatgaccttaaagttcctccc
gtaaaacaggaattgctagaggctgctgaaacggaaattcgacaaaccgaacaaagatat
gcccgaggtgagattaccgaagtagaaagatttcaaaaagtaattgatacttggaatagc
acttctgaaaatcttaaagatgaagtagtacgtaattttaaagctagcgatcctcttaat
tctgtctatatgatggcttttagcggtgcgcgaggtaatttatctcaggtacgtcagcta
gtagggatgcgaggtttgatggctgatcctcaaggggaaattattgatttaccaatcaaa
actaacttccgtgagggtttaacggttactgaatatattatttcttcttatggtgcgaga
aaaggtttagtagatacagctttaagaacagcagattctggttatttaactcgtcgatta
gtggacgtagctcaagatgtaattgtcagagagatagattgtggtactcaacgagcagtt
acgctgcgagccatgactgatggcgatcgcgttttaattcccctgagcgatcgcttgatg
ggtcgagtcttagctagagatgccatggactctaaaactggagaagtgattgcacagcga
aatcagaacattgatgaggatttatctctagaaattggtcgtcgggctgaagaggtaatg
gtgcgttctcctttaacttgtgaggcagcacgttctgtgtgtcaacattgctatggttgg
agtttggctcacggcaaaatggttgacatgggtgaagcagtaggtattattgctgctcaa
tcaattggagaaccaggaacccagttaaccatgcgaaccttccacacaggaggtgtcttt
acaggagaagttgcccgacaaataagagcagaagtggttggtaaagtcaagtatagtaaa
ggtttaattacccgtagagttagaactcgtcatggtgacgaaagagagcaagtagaggta
gcaggagatatattactagtaccaagcaaaggacaatctttcaattatcctgtaacacca
ggttcttatgttcatgtattcgatggagaccaggtagaaaaagggcaacttttagcagaa
atcaactcagcaaaagtccaaaaatcgactgaaaaagcagctaaagacgtatcgtctcat
ttagcaggagaagttctgtttgccgatttaattccggaagaaaaaactgaccgtcaaggc
aatactacccgtattgctcaaagagcgggattattgtggattttgtcgggagaagtttac
aatctacttcctggcgcagaaccagttgttaaaaatggagatcaagtccaaccaggggac
attctagctcaaacaagattaatgtctgccagtgggggggtaattcggatgactcctggc
agtcgtgaaatagaagtaattacggcttctgttttattagaccaagccaaagttaaagta
gagagcgacggcggtcgagaacaatatattatttatacggctgacgatcaaagatttttg
ttgaaaactactccaggaacaaaagttcaaaatcatcaagtagtagccgaattaattgat
gaccgctataaaacttcaactggtggcattattaaatatgcaggagtagaaatttctaaa
ggtagccgtaaacaaggttatgaaattagccaaggtggaactattttatggatttcggaa
gaaagtcacgaagtcaataaagatatttctttgttactagtagaagatggtcagtatgtt
gaagcaggaaccgaagtagttaaagatgttttttgtcaatcctctggggtagcagaagta
attcaaaaaaatgatattctgcgtgaaattatcatcaaaccaggagaattacacttatta
gatgatattgaccctagtctggacggacaactaattcaaccaggtactgaagtaattcct
ggagttacagttgaagaactgaaatacggagaaattgttgaaactactgaaggtgttgcg
ctactactaagaccagtagttgaataccaagtatctgatgaacctgctgcaccttctcaa
gcttcgattaaccatgaagatggtcgtcaaattgagttacgctctgtacaacgacttttc
tttaaagatggagaaagagttcaatcggtagaaggagtttctttactaagtactcagtta
gttctggaaattgataatgctgacgaaattgaaactgctacaaatttaagcgcggatatt
gaattaaaacctgaccaagacgatcctgactcgcaacgcttgcagttggttattttagag
tctttggtcatccgccgagatactgacgcagacccttatagcgggaatattcaaaccaga
gttttagtagaagacggtcaagaaattcctaaaggagcaacgatcgctcgaacagaaatt
cgttgcaaagaagctggagaagtccgaggtattcgtaagggaggagaagcacttcgtaga
attttagtggtacggaatagcgatcgcgtttcttatgaattagctgccaagaaaagtgaa
tgccaatgtcgagaaggtgatttactagtagctggtaccgagttagtttctggaactaaa
ctagttgaatcgggacaagtagtagaaataactgaaacagaaggcaacaaaactacagtt
gttctacgtttggctcgtccttatcgggtatctgctggtgcgattttacatatcgacaac
ggggatttagtacaaagaggtgataacttagtactattaatctttgaacgagctaaaact
ggagatattattcagggtttacccagaattgaagagctattagaagctcgcaaacccaaa
gaagcctgtgttttgagtcgtcgaccaggagtttgtcaagtagtttacgaacaagatgaa
accgttgacgtaaaaattatcgaagaagatggtgttgttagcgattatccggtcggccct
ggtcaaaatgcgatggtatccgacggacaaaaagttggacctggcgaacctttgactgat
ggaccagccaatcctcacgaaatcctagaggttttctttaattattatttggaagaaaaa
ggttgctacgaagcatctttaattggcttacaacaagctcaaaaattcttagttacccaa
gtacagtctgtttatcaaagtcaaggaattgatatttctgacaaacatattgaagtaatt
gtccgccagatgacttctaaagttcgagtcgatgacggtggtgatactacaatgcttcct
ggagagttagtagaattacgacaaatcgaacaagtcaacgaagctatgtctattactggt
ggcgcacctgctcagtatactcctgtacttttaggtattaccaaggcttctttgaatact
gacagctttatctccgcagcttctttccaagaaactactcgtgtattaaccgaagcagcc
attgaaggtaaatctgattggctcagaggtttaaaagaaaacgtcattattggtcgtttg
attcctgctggaacaggttttaacacccacgaagagggagtaggtagccgtggcgattta
gattcacgcagtggttcaatgtatagttacggtagcgaaggctatgacagttatcggatt
ggcgaagataactttattcaagagcctttacctcgtcgctatcaagattttgatgatgac
gaaaatgttattcttgatgatcaaactgccagagcaattatctcagaagaagatgatgaa
ccactgggaggcagttattatgatgagtttgagggttttgaagaagagtaa
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integrated database retrieval system
