Stanieria cyanosphaera: Sta7437_3226
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Entry
Sta7437_3226 CDS
T02406
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scs
Stanieria cyanosphaera
Pathway
scs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sta7437_3226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scs03019
]
Sta7437_3226
03400 DNA repair and recombination proteins [BR:
scs03400
]
Sta7437_3226
Enzymes [BR:
scs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sta7437_3226
Messenger RNA biogenesis [BR:
scs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sta7437_3226
DNA repair and recombination proteins [BR:
scs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sta7437_3226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_24
Helicase_Sgs1
GerE
TnsD
DUF742
DUF4427
Motif
Other DBs
NCBI-ProteinID:
AFZ36733
UniProt:
K9XW22
LinkDB
All DBs
Position
complement(3653194..3655320)
Genome browser
AA seq
708 aa
AA seq
DB search
MTRLEKALKHYFGYDSFRPGQKEIIEETLNNQDLLIIMPTGGGKSLCFQLPALLKPGLTL
VVSPLIALMQDQVDALKDRGIDATFLNSTLDYEEMRSRYGAILQGKIKLLYVAPERLLAE
KFRTFLDKIANNIGISTIAIDEAHCISEWGHDFRPEYRQLKQFRQRYPQVPLLALTATAT
KRVQQDIIEQLGLQNPSVHLNSFNRFNIHYQVQPKQQRSYHQLLQEIRSQSGAGIVYCLS
RRNVEEVAYKLQKDGIKALPYHAGMTDEKRTINQTRFLRDDVQVMVATIAFGMGINKPDV
RFVFHYDLPRSLENFYQESGRAGRDGESATSILFFSMGDWKKIDYLIEQKPDPQEQRIAR
QQLNQVIDYAEGVDCRRTILLRYFGERFSGNCGQCDNCLNPHPIEDWTIEAQKFLSCVAR
CQEKFGMKHIIEVLRGSRNKKVEQYGHHLLSTYGIGKDKTKDEWKMLVRSLLNQGLVSQS
NDGYRILKLNKRSWEILRKQRTVEIAVKNKIDSQTKPQNNPYQAEKEILYEQLKKLRKQI
ADLHSIPPYIIFADSSLKLMAQLQPQTLEDFASISGVNDYKLQQYGEQFISLIRTFCQQQ
QLPVPLPSRSQMTTLQLHHRGLTVREIAAQRSLAVNTINQHLSELIELNQPVAINKLVAP
EKQKIITQILEKVGDDSLKNLKETLGNDYSYEEIKLVRAWYRRRHQTQ
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgactagactagaaaaagctttaaaacattactttggttatgatagttttcgccctgga
caaaaagaaattattgaagaaacactcaataatcaagatttactgattattatgccgacg
ggtggtggtaaatctctctgttttcagttaccagctttactcaaacctggtttaaccttg
gttgtttcacctttaattgctttgatgcaggatcaggtagatgctctcaaagaccgaggc
atcgatgctacttttcttaatagtaccttagattatgaagaaatgcgatcgcgttatgga
gcgattcttcaaggtaagattaaattactttatgtcgctccagaaagacttttagccgaa
aaatttaggacttttctagataaaattgcgaacaatattggtatttctactattgcgatc
gatgaagctcattgtatctctgaatggggacatgattttcgtcctgaatatcgtcaatta
aaacaatttcgccaacgttatcctcaagtacctttacttgctttaaccgccacagcaaca
aaaagagttcaacaagatattatcgaacaactaggtttacaaaatccttcggttcatctt
aacagttttaatcgtttcaatattcattatcaagtccaaccaaaacaacaaagaagttat
catcaactgctacaagaaattcgttctcaatctggtgcaggaatagtttattgtctcagt
cgtcgtaatgtcgaagaagttgcctataaattacaaaaagatggcatcaaagctctacca
tatcatgcaggaatgactgatgaaaaaagaactattaatcaaactcgttttttacgagat
gatgtacaagtaatggtggcaacaattgcctttggaatgggtattaataaacccgatgtt
cgctttgtttttcattacgatttacctcgaagtttagaaaacttttatcaagagtcaggt
agagccggtcgagatggagaatcagccacctcaattttattttttagtatgggtgattgg
aaaaaaattgattatttaattgaacaaaaaccagatccacaagagcaaagaattgctcgt
caacaattaaatcaagtaatagattatgcagaaggagttgattgtcgccgaactatttta
ttacgttattttggtgaaagattttcaggtaattgtggtcaatgcgataattgtttaaat
cctcatcctatcgaagattggactatcgaagcgcaaaaatttctttcgtgtgtggctcgt
tgtcaagaaaaatttggcatgaagcatattattgaagtgttaagaggttcacggaataaa
aaagtagaacaatacggacatcatttactttccacctatggtattggtaaagataaaacc
aaagatgaatggaaaatgttagttcgatctttactcaatcaaggtttagttagtcaaagt
aatgacggctaccgaattcttaaattaaataaacgcagttgggaaattttacgtaaacag
cgcactgtagaaattgctgttaaaaataaaatagattctcaaacaaaaccacaaaataat
ccttatcaagctgaaaaagaaattctttatgaacaattaaaaaaattacgtaaacaaata
gctgatcttcattctattcctccttatattatttttgcagattctagtttaaaattgatg
gcacagttgcaacctcaaactttagaagattttgcttctatttctggagtcaatgattat
aaactacaacaatatggagaacaatttatttccttaatcagaactttttgtcaacaacaa
caactaccagttcctctaccttctcgcagtcaaatgacaactctccaactacatcatcga
ggtttaactgtcagagaaattgcagcccaaagaagtttagctgtaaatacaattaatcaa
catctgagtgaactgattgaactcaatcaacctgtagcaattaataaattagtcgctcca
gaaaagcaaaaaataattactcaaattttagaaaaagttggtgatgattctttgaaaaat
ttaaaagaaactctcggaaatgattatagttatgaagaaatcaaattagtacgagcttgg
tatcgtcgtagacatcaaactcaataa
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