Stanieria cyanosphaera: Sta7437_3342
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Entry
Sta7437_3342 CDS
T02406
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scs
Stanieria cyanosphaera
Pathway
scs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sta7437_3342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scs03019
]
Sta7437_3342
03009 Ribosome biogenesis [BR:
scs03009
]
Sta7437_3342
Enzymes [BR:
scs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sta7437_3342
Messenger RNA biogenesis [BR:
scs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sta7437_3342
Ribosome biogenesis [BR:
scs03009
]
Prokaryotic type
rRNA helicases
Sta7437_3342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NTPase_1
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
AFZ36848
UniProt:
K9XWD4
LinkDB
All DBs
Position
3783481..3784938
Genome browser
AA seq
485 aa
AA seq
DB search
MTVTFKSLGLSDTCVQQLEELGFVEPTQIQQQAIPSLLEGRDLVGQSQTGTGKTAAFSLP
MLDLIDSRNKAVQGLILTPTRELAQQVGQAINDFASNRRIYVLTVYGGQSIERQIRSLRK
GVQVVVGTPGRIIDLLERKELSLDQVRLAVLDESDEMLSMGFIDDVKKILQQASKQRQTA
CFSATMPREIKDLIQQFLKSPIMVTVEQPKAAPARINQQAYMVPRGWHKNQALQPILEIE
EIDSAIIFVRTKKTASELTSKLQEAGHSVDEYHGDLSQIQRERLVQRFRDGKIKMIVATD
IAARGLDVENLTHVINYDLPDNAETYIHRIGRTGRAGKHGTAIALVQPIDRRTLRQIEHR
LRQRLEINKIPSRTEVEAKRLAKLQAQVQETLSGERMASFLPLVRELSDEYDPQAIAAAA
LQMVYDQNCPPWMKTDWEVPQSGVPKPLIKRKNNRSNRKDGYKSKSVTENRSQGKIRSEV
VISEQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgacagttactttcaaaagcttaggattatcagatacttgcgtacaacaattagaagaa
cttggttttgttgaaccaactcaaatacaacaacaagcaatcccttctttattagaaggt
cgcgatttagtagggcaatctcaaacaggaacaggcaaaacagcagcattttcactgccg
atgttggatttgattgatagtcgcaataaagcagttcaaggtttaattctgacaccaact
agagaattagctcaacaagtaggacaggcaatcaacgattttgcaagtaatcgcagaatt
tacgtgcttactgtttatggtggtcaatctattgagcgacaaattcgtagtttgaggaaa
ggagtgcaggttgttgtaggtactccaggaagaattattgatttactcgaaagaaaagaa
ttaagtttggatcaggtacgtttagctgtactcgatgaatccgatgaaatgttgagtatg
ggttttatcgatgatgtcaaaaaaatcttgcaacaagcttcaaaacagcgacaaacagct
tgtttctcagcaactatgcctcgagaaatcaaagatttgattcagcaatttctcaaatca
ccgatcatggtaaccgttgaacagcctaaagctgctcctgccagaattaatcaacaagcc
tacatggttcctcgtggttggcacaaaaaccaagctttacaaccgattttagaaatagaa
gaaatcgattcagcaattatttttgtccgaaccaaaaaaactgccagcgaattaactagc
aaacttcaagaggcgggtcacagtgttgatgaatatcatggtgatttgagtcaaattcaa
agagaacgtttagttcaacgttttcgagatggaaaaatcaaaatgatagtagcgacagac
attgctgctcgtggtttagacgtagaaaacttaactcacgtaatcaattacgatttacca
gataatgctgaaacttacattcatcgtattggtcgtactggtcgtgctggcaaacatgga
actgcgatcgctttagtccaaccaattgatcgccgtactttaagacaaattgagcatcgt
ctccgccaaagattagaaattaacaagattcctagccgtaccgaggtagaagctaaaaga
ctggctaaactccaagctcaagtacaagaaactttatctggcgaaagaatggcatccttt
ttacctttagtcagggaattaagtgacgaatacgatccccaagcgatcgctgctgctgct
ttacaaatggtttatgaccaaaattgtcctccatggatgaagactgattgggaagttcct
caatctggtgtacccaaaccactcatcaaacgcaaaaacaaccgcagtaatcgtaaagat
ggttataaatctaagtcagtgactgaaaacaggtcacaaggtaaaataaggtctgaagtt
gttattagcgaacagtaa
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