Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488: SCAT_1637
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Entry
SCAT_1637 CDS
T01646
Name
(GenBank) conserved protein of unknown function
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sct
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488
Pathway
sct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCAT_1637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sct03019
]
SCAT_1637
03009 Ribosome biogenesis [BR:
sct03009
]
SCAT_1637
Enzymes [BR:
sct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SCAT_1637
Messenger RNA biogenesis [BR:
sct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCAT_1637
Ribosome biogenesis [BR:
sct03009
]
Prokaryotic type
rRNA processing factors
SCAT_1637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
CCB74357
LinkDB
All DBs
Position
complement(1766010..1769741)
Genome browser
AA seq
1243 aa
AA seq
DB search
MLDIPEPGNAAPEAPSSNDSGVSAEGGTSAAPRRRRRAAARPAGPPSAAQETAAEVVTPA
TPAPAAEPQQAPPSEEAPAPRTRRRATRKATAPVGPPAVSEEPAAEAPAAEEAPARTRRR
ATRAAATEETTPQAEEAAAPEARTRRRATRKATAPAGPPAVGEEQAAEEPARPEAAQPEP
AQAEAPAPRARRTRKRAAAEPEAAETPAASRRSRKRTADLAEDGSRRLKPGSLAEPVEEP
RAAAPAPAEEPRTALADKAAAEPAAPEPAAEETPRGRRRGARRAVAPAGPPAFAHGTADQ
PRPAAEPAAEEEAEPAPTGGRRRRAVRPPTAVFQPPVFTPAAAPEPPAAVRDEEEPEEGA
SRRRRRRRGPAEEVTVAETAPAEEESAESAERAEEAEAEHEAEWDEESGEERPSRRRRRG
GRRRRRGDAAEAEETAAEHAEDEEHAAEEGEPEEGEDAEAGEYATGTSTSRRRRRRRRRS
GETAVEGEPEADDPERTVVKIREPRKKAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRR
VPIITEAEFLARREAVERVMVVRENGDRTQIGVLEDGVLVEHFVNKEQATSYVGNVYLGK
VQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEAMGLGGGPRRIESALKSGQSVLVQVTKDP
IGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQILKKIVPENAGVIVRT
AAEGASEEELSRDVSRLQAQWEEIQKNAKNGNAPSLLYGEPDMTVRVVRDIFNEDFSKVI
ISGDDAWETIHGYVSHVAPDLTDRLQKWTSEVDVFATYRIDEQLLKALDRKVWLPSGGSL
VIDRTEAMVVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDM
VLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGLIQMTRKRVGQGLLESFSETCVHCNGR
GVIVHMDQATTAGGGGKRKKKGKPAPAAVEPAAEELPAEPEVPAVEAEAEEEEWFGSPAE
AEAAAVASRSRGRRRAVREPEPVVEPVVEPAAEPEPQPEPAPAPEPEPEPEPEPVRATRR
RAPRKATAPAGSPKTVTEPAAAEIVLPVAETTPEPAPEPAPTPAPEARPVRPRRAARKAS
APAGPPPASAGDAAVVVISTPAREPEPEPEPEAEAPKKRATRKTAAKKTTTAKKAVAKKT
TTAAKKTTTAKKAAAKKTTTAKKTTAAKKTTAKKTTTAPETTP
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgctcgatatccccgagcccggtaatgcggcgcccgaggcgcccagcagcaacgattcc
ggcgtgagcgccgaaggcggtacgtccgccgcgccgcgtcgcaggcgccgggcggccgcc
cgcccggcgggtccgccgtccgccgcacaggagacggccgccgaggtcgtcacccccgcg
accccggctccggcggccgagccgcagcaggccccgccgtccgaggaggcccccgcgccg
cgtacccggcggcgtgcgacgcgcaaggcgaccgcgcccgtcggcccgccggccgtgagc
gaggagccggccgccgaggccccggccgccgaggaggcgccggcccgtacccgccgccgc
gccacccgcgccgccgccaccgaggagaccaccccgcaggccgaagaggcggcggccccc
gaggcgcgcacccggcgccgtgcgacgcgcaaggcgaccgcccccgcgggccctccggcc
gtcggcgaggagcaggccgccgaggagcccgcgcggcccgaggcggcgcagcccgagccc
gcccaggccgaagccccggccccgcgcgcccgccgtacccgcaagcgcgccgccgccgag
ccggaggccgccgaaaccccggcggcgtcccgccgttcccgcaagcgcaccgccgacctg
gccgaggacgggtcgcggcggctgaagcccggttcgctcgccgagccggtcgaggagccc
cgcgccgccgccccggccccggccgaggagccgcgcaccgccctggccgacaaggccgcc
gccgagcccgccgccccggagcccgccgccgaggagacgccgcgcggacgccgccgtggc
gcccgccgggcggtcgccccggccggcccgccggccttcgcccacggcaccgccgaccag
ccgcggcccgccgccgagcccgccgccgaggaggaggccgaaccggccccgaccggtggc
cgccgccgccgcgccgtccgtccgccgacggccgtcttccagccgccggtcttcaccccg
gccgccgcccccgagcccccggccgccgtccgcgacgaggaggagcccgaggagggcgcc
tcgcgccgccgtcgtcgccgccgcggcccggccgaggaggtcacggtcgccgagaccgcc
ccggccgaggaggagagcgccgaatccgccgagcgcgcggaggaggccgaggccgagcac
gaggccgaatgggacgaggagtcgggcgaggagcgcccctcccgccgccgccgtcggggc
ggccgtcgccgtcgccgcggtgacgccgccgaggccgaggagaccgcggccgagcacgcc
gaggacgaggaacacgccgccgaggagggcgagcccgaggagggcgaggacgccgaggcc
ggcgagtacgccaccggcaccagcaccagccgccgtcgccgtcgccgccgtcggcgcagc
ggcgagaccgccgtggagggcgagcccgaggccgacgaccccgagcgcaccgtcgtcaag
atccgcgagccgcgcaagaaggccgaaccctccgacgaggtccagtccatcaagggctcg
acccggctggaggccaagaagcagcgccgccgcgagggccgggagcagggccgccgccgg
gtgccgatcatcaccgaggccgagttcctggcccgccgcgaggccgtcgaacgggtgatg
gtggtccgcgagaacggcgaccgcacccagatcggcgtcctggaggacggcgtcctggtc
gagcacttcgtcaacaaggagcaggccacctcctacgtcggcaacgtctacctcggcaag
gtgcagaacgtcctgccgtcgatggaggccgccttcgtcgacatcggcaagggccgcaac
gccgtgctctacgccggtgaggtcaacttcgaggcgatgggcctcggcggtggcccgcgc
cgcatcgagtccgcgctcaagtccggccagtcggtgctggtgcaggtcaccaaggacccg
atcggccacaagggcgcccggctgaccagccaggtctccctccccggccgctacctggtc
tacgtgcccgagggctcgatgaccggcatcagccgtaagctgcccgacaccgaacgggcc
cggctcaagcagatcctcaagaagatcgtcccggagaacgcgggcgtgatcgtgcgcacc
gccgccgagggcgccagcgaggaagagctgtccagggacgtctcccggctgcaggcgcag
tgggaggagatccagaagaacgcgaagaacggcaacgcgcccagcctgctgtacggcgag
ccggacatgaccgtccgggtggtccgcgacatcttcaacgaggacttctccaaggtcatc
atcagcggcgacgacgcctgggagaccatccacggatacgtctcgcacgtcgcgcccgac
ctgaccgaccggctccagaagtggacctcggaggtggacgtcttcgccacctaccggatc
gacgagcagctgctgaaggcgctggaccgcaaggtctggctgccgtccggcggttcgctg
gtgatcgaccgcaccgaggcgatggtcgtcatcgacgtcaacaccggcaagttcaccggc
cagggcggcaacctggaggagacggtcaccaggaacaacctggaggcggccgaggagatc
gtgcgccagctgcgcctgcgcgacctcggcggcatcatcgtgatcgacttcatcgacatg
gtgctggagtccaaccgggacctggtcatgcgccgcctgctggagtgcctgggccgcgac
cgcaccaagcaccaggtggccgaggtcacctcgctgggcctgatccagatgacccgcaag
cgggtcggccagggcctgctggagtcgttctccgagacctgcgtgcactgcaacggccgt
ggcgtcatcgtccacatggaccaggcgaccaccgccggtggcggcggcaagcggaagaag
aagggcaagccggccccggccgccgtcgagccggccgccgaggagctgcccgccgaaccc
gaggtcccggccgtggaggccgaggccgaggaggaggagtggttcggcagtccggccgag
gcggaggccgccgcggtggcctcccgctcgcgcggccggcgccgtgcggtacgggaaccc
gagccggtcgtcgaaccggtcgtcgaaccggccgccgagcctgagccgcagccggaaccg
gcgcccgcgcctgaaccggagccggaaccggaaccggagccggtacgtgcgacccggcgg
cgcgccccgcgcaaggcgacggccccggcggggtcgccgaagaccgtcaccgaaccggcc
gcggccgagatcgtcctgccggtcgccgagaccacgcccgaacccgccccggaaccggct
ccgacgccggcccccgaggcccgcccggtgcgcccgcgccgtgccgcccgcaaggcatcc
gccccggccggccccccgccggcctcggccggtgacgccgcggtggtggtcatctccacc
ccggcgcgtgagccggaaccggagccggagccggaggccgaggcgcccaagaagcgcgcc
acccgcaagacggcggccaagaagacgaccaccgccaagaaggcagtggccaagaagacg
accacggccgcgaagaagacaaccaccgccaagaaggcggcggccaagaagacgacgacg
gccaagaagacgacggcggctaagaagaccaccgccaagaagacgacgaccgcgccggaa
accaccccgtaa
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